Difference between revisions of "PRPPAMIDOTRANS-RXN"

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(Created page with "Category:reaction == Reaction PALMITOYL-COA-HYDROLASE-RXN == * direction: ** left-to-right * common-name: ** palmitoyl-coa hydrolase * ec-number: ** [http://enzyme.expasy....")
(Created page with "Category:reaction == Reaction PRPPAMIDOTRANS-RXN == * direction: ** reversible * common-name: ** amidophosphoribosyltransferase ** amidophosphoribosyl transferase * ec-num...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PALMITOYL-COA-HYDROLASE-RXN ==
+
== Reaction PRPPAMIDOTRANS-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** palmitoyl-coa hydrolase
+
** amidophosphoribosyltransferase
 +
** amidophosphoribosyl transferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.2.2 ec-3.1.2.2]
+
** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PALMITYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[PALMITATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18316]]
+
* Gene: [[SJ04979]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ09703]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15928]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20754]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-321]], cutin biosynthesis:
+
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
−
** '''3''' reactions found over '''16''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-1121]], suberin monomers biosynthesis:
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6733]], sporopollenin precursors biosynthesis:
+
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
−
** '''8''' reactions found over '''18''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR100287
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16645 16645]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01274 R01274]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q64559 Q64559]
+
** [http://www.uniprot.org/uniprot/P28173 P28173]
−
** [http://www.uniprot.org/uniprot/O14734 O14734]
+
** [http://www.uniprot.org/uniprot/P35433 P35433]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
−
{{#set: common-name=palmitoyl-coa hydrolase}}
+
** [http://www.uniprot.org/uniprot/O29388 O29388]
−
{{#set: ec-number=ec-3.1.2.2}}
+
** [http://www.uniprot.org/uniprot/O67236 O67236]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/P65829 P65829]
 +
** [http://www.uniprot.org/uniprot/O57979 O57979]
 +
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
 +
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
 +
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
 +
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
 +
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
 +
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
 +
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
 +
** [http://www.uniprot.org/uniprot/O26742 O26742]
 +
** [http://www.uniprot.org/uniprot/P43854 P43854]
 +
** [http://www.uniprot.org/uniprot/P35853 P35853]
 +
** [http://www.uniprot.org/uniprot/P41390 P41390]
 +
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 +
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 +
** [http://www.uniprot.org/uniprot/P04046 P04046]
 +
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 +
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 +
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 +
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 +
** [http://www.uniprot.org/uniprot/P52418 P52418]
 +
** [http://www.uniprot.org/uniprot/P52419 P52419]
 +
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 +
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 +
** [http://www.uniprot.org/uniprot/P00497 P00497]
 +
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=amidophosphoribosyl transferase|amidophosphoribosyltransferase}}
 +
{{#set: ec-number=ec-2.4.2.14}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • amidophosphoribosyltransferase
    • amidophosphoribosyl transferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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