Difference between revisions of "PSERTRANSAMPYR-RXN"

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(Created page with "Category:reaction == Reaction RXN-13202 == * direction: ** left-to-right * common-name: ** ammonia-dependent carbamoyl-phosphate synthase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction PSERTRANSAMPYR-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52] == Reaction formula == *...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-13202 ==
+
== Reaction PSERTRANSAMPYR-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
 
** ammonia-dependent carbamoyl-phosphate synthase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/6.3.4.16 ec-6.3.4.16]
+
** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[AMMONIUM]][c] '''+''' 2 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ17851]]
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* Gene: [[SJ02143]]
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ15949]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-4984]], urea cycle:
+
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
* UNIPROT:
+
* METANETX-RXN : MNXR102169
** [http://www.uniprot.org/uniprot/O15829 O15829]
+
* RHEA:
** [http://www.uniprot.org/uniprot/O15830 O15830]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16576 16576]
** [http://www.uniprot.org/uniprot/P07756 P07756]
 
** [http://www.uniprot.org/uniprot/P31327 P31327]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00149 R00149]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
* RHEA:
+
{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18030 18030]
+
{{#set: ec-number=ec-2.6.1.52}}
{{#set: direction=left-to-right}}
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{{#set: nb gene associated=1}}
{{#set: common-name=ammonia-dependent carbamoyl-phosphate synthase}}
 
{{#set: ec-number=ec-6.3.4.16}}
 
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:24, 18 March 2021

Reaction PSERTRANSAMPYR-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102169
  • RHEA:
  • LIGAND-RXN: