Difference between revisions of "PSERTRANSAMPYR-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN-17918 == * direction: ** left-to-right * common-name: ** dna ligase (atp) == Reaction formula == * 1 5-Phospho-terminated-DNAs[c] '''...")
(Created page with "Category:reaction == Reaction PSERTRANSAMPYR-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52] == Reaction formula == *...")
 
(4 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-17918 ==
+
== Reaction PSERTRANSAMPYR-RXN ==
 
* direction:
 
* direction:
** left-to-right
+
** reversible
* common-name:
+
* ec-number:
** dna ligase (atp)
+
** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[A-5-prime-PP-5-prime-DNA]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c]
+
* 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ19344]]
+
* Gene: [[SJ02143]]
** Category: [[annotation]]
+
** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ16080]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ15543]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ13521]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR102169
{{#set: common-name=dna ligase (atp)}}
+
* RHEA:
{{#set: nb gene associated=4}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16576 16576]
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
{{#set: reconstruction category=annotation}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: direction=reversible}}
 +
{{#set: ec-number=ec-2.6.1.52}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Latest revision as of 11:24, 18 March 2021

Reaction PSERTRANSAMPYR-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102169
  • RHEA:
  • LIGAND-RXN: