Difference between revisions of "PYFLAVOXRE-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demeth...")
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-12...")
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[[Category:reaction]]
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[[Category:pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY] ==
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* direction:
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* taxonomic-range:
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1239 tax-1239]
 
* common-name:
 
* common-name:
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** [histone-h3]-lysine-36 demethylase
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** purine nucleobases degradation i (anaerobic)
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** histone demethylase activity (h3-k36 specific)
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== Reaction(s) found ==
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* ec-number:
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* [[1.2.1.2-RXN]]
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** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
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* [[FORMYLTHFDEFORMYL-RXN]]
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* synonymous:
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* [[GUANINE-DEAMINASE-RXN]]
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** histone-lysine (h3-k36) demethylase
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* [[METHENYLTHFCYCLOHYDRO-RXN]]
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** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
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* [[RXN-7682]]
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** h3-k36-specific demethylase
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* [[RXN0-901]]
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** histone demethylase
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== Reaction(s) not found ==
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** jhdm1a
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* [http://metacyc.org/META/NEW-IMAGE?object=4.3.1.4-RXN 4.3.1.4-RXN]
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** jmjc domain-containing histone demethylase 1a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8752 RXN-8752]
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R128-RXN R128-RXN]
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=R127-RXN R127-RXN]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7566 RXN-7566]
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* Gene: [[SJ18735]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R62-RXN R62-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATEKIN-RXN ACETATEKIN-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=R63-RXN R63-RXN]
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* Gene: [[SJ05371]]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-FORMIMINOTRANSFERASE-RXN GLYCINE-FORMIMINOTRANSFERASE-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=R13-RXN R13-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8755 RXN-8755]
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* Gene: [[SJ19102]]
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{{#set: taxonomic-range=tax-1239}}
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** Category: [[annotation]]
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{{#set: common-name=purine nucleobases degradation i (anaerobic)}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction found=6}}
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* Gene: [[SJ00708]]
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{{#set: completion rate=0.35}}
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** Category: [[annotation]]
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{{#set: nb total reaction=17}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ13421]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ19354]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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== Pathway(s)  ==
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=histone demethylase activity (h3-k36 specific)|[histone-h3]-lysine-36 demethylase}}
 
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{{#set: ec-number=ec-1.14.11}}
 
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{{#set: synonymous=histone-lysine (h3-k36) demethylase|jmjc domain-containing histone demethylase 1a|jhdm1a|histone demethylase|h3-k36-specific demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase}}
 
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{{#set: nb gene associated=6}}
 
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{{#set: nb pathway associated=0}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 09:32, 27 August 2019

Pathway P164-PWY

  • taxonomic-range:
  • common-name:
    • purine nucleobases degradation i (anaerobic)

Reaction(s) found

Reaction(s) not found



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