Difference between revisions of "PYFLAVOXRE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-191410 tax-...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] == * direction: ** left-to-right * common-name: ** [histone-h3]-lysine-36 demeth...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8661 RXN-8661] ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-191410 tax-191410]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-1117 tax-1117]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2763 tax-2763]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-33090 tax-33090]
 
 
* common-name:
 
* common-name:
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** trans-lycopene biosynthesis ii (oxygenic phototrophs and green sulfur bacteria)
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** [histone-h3]-lysine-36 demethylase
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== Reaction(s) found ==
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** histone demethylase activity (h3-k36 specific)
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* [[2.5.1.32-RXN]]
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* ec-number:
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* [[RXN-11354]]
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** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
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* [[RXN-11356]]
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* synonymous:
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* [[RXN-11357]]
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** histone-lysine (h3-k36) demethylase
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* [[RXN-12243]]
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** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
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* [[RXN-12244]]
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** h3-k36-specific demethylase
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* [[RXN-8042]]
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** histone demethylase
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* [[RXNARA-8002]]
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** jhdm1a
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== Reaction(s) not found ==
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** jmjc domain-containing histone demethylase 1a
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All reactions of this pathways are in present
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== Reaction formula ==
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{{#set: taxonomic-range=tax-191410|tax-1117|tax-2763|tax-33090}}
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
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{{#set: common-name=trans-lycopene biosynthesis ii (oxygenic phototrophs and green sulfur bacteria)}}
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== Gene(s) associated with this reaction  ==
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{{#set: nb reaction found=8}}
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* Gene: [[SJ18735]]
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{{#set: completion rate=1.0}}
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** Category: [[annotation]]
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{{#set: nb total reaction=8}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ05371]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ19102]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ00708]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ13421]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ19354]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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== Pathway(s) ==
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
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{{#set: direction=left-to-right}}
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{{#set: common-name=histone demethylase activity (h3-k36 specific)|[histone-h3]-lysine-36 demethylase}}
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{{#set: ec-number=ec-1.14.11}}
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{{#set: synonymous=histone-lysine (h3-k36) demethylase|jmjc domain-containing histone demethylase 1a|jhdm1a|histone demethylase|h3-k36-specific demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase}}
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{{#set: nb gene associated=6}}
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{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:28, 26 August 2019

Reaction RXN-8661

  • direction:
    • left-to-right
  • common-name:
    • [histone-h3]-lysine-36 demethylase
    • histone demethylase activity (h3-k36 specific)
  • ec-number:
  • synonymous:
    • histone-lysine (h3-k36) demethylase
    • protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
    • h3-k36-specific demethylase
    • histone demethylase
    • jhdm1a
    • jmjc domain-containing histone demethylase 1a

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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