Difference between revisions of "PYRIMSYN3-RXN"

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(Created page with "Category:reaction == Reaction RXN0-5293 == * direction: ** left-to-right * common-name: ** succinate-semialdehyde dehydrogenase [nad(p)+] * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction PYRIMSYN3-RXN == * direction: ** left-to-right * common-name: ** phosphohydroxymethylpyrimidine kinase * ec-number: ** [http://enzyme.expasy....")
 
(One intermediate revision by one other user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-5293 ==
+
== Reaction PYRIMSYN3-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** succinate-semialdehyde dehydrogenase [nad(p)+]
+
** phosphohydroxymethylpyrimidine kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.16 ec-1.2.1.16]
+
** [http://enzyme.expasy.org/EC/2.7.4.7 ec-2.7.4.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[SUCC-S-ALD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05897]]
+
* Gene: [[SJ18183]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6536]], 4-aminobutanoate degradation III:
+
* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6910]], hydroxymethylpyrimidine salvage:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7357]], thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine diphosphate salvage IV (yeast):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR103045
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19894 19894]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
 +
** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
 +
** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
 +
** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=succinate-semialdehyde dehydrogenase [nad(p)+]}}
+
{{#set: common-name=phosphohydroxymethylpyrimidine kinase}}
−
{{#set: ec-number=ec-1.2.1.16}}
+
{{#set: ec-number=ec-2.7.4.7}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction PYRIMSYN3-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphohydroxymethylpyrimidine kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6890, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6910, hydroxymethylpyrimidine salvage:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7357, thiamine phosphate formation from pyrithiamine and oxythiamine (yeast):
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-7356, thiamine diphosphate salvage IV (yeast):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II:
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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