Difference between revisions of "PYRUFLAVREDUCT-RXN"
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(Created page with "Category:reaction == Reaction RXN-10702 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase ** opc6-3-hydroxyacyl-coa dehydrogenase * ec-num...") |
(Created page with "Category:reaction == Reaction BADH-RXN == * direction: ** reversible * common-name: ** betaine-aldehyde dehydrogenase ** betaine aldehyde dehydrogenase * ec-number: ** [ht...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction BADH-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** betaine-aldehyde dehydrogenase |
− | ** | + | ** betaine aldehyde dehydrogenase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.2.1.8 ec-1.2.1.8] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[BETAINE_ALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[BETAINE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * Gene: [[ | + | * Gene: [[SJ00435]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ11330]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ22552]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a |
− | * Gene: [[ | + | * Gene: [[SJ11331]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | * Gene: [[SJ09287]] | |
− | |||
− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ06047]] |
− | |||
− | |||
− | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[SJ05897]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
</div> | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY1F-353]], glycine betaine biosynthesis III (plants): |
− | ** ''' | + | ** '''1''' reactions found over '''3''' reactions in the full pathway |
+ | * [[BETSYN-PWY]], glycine betaine biosynthesis I (Gram-negative bacteria): | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[CHOLINE-BETAINE-ANA-PWY]], choline degradation I: | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-3722]], glycine betaine biosynthesis II (Gram-positive bacteria): | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7494]], choline degradation IV: | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * category: [[orthology]]; source: [[ | + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a |
== External links == | == External links == | ||
− | {{#set: direction= | + | * RHEA: |
− | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30070 30070] |
− | {{#set: ec-number=ec-1. | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15305 15305] |
− | {{#set: nb gene associated= | + | * LIGAND-RXN: |
− | {{#set: nb pathway associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02565 R02565] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P17202 P17202] | ||
+ | ** [http://www.uniprot.org/uniprot/P17445 P17445] | ||
+ | ** [http://www.uniprot.org/uniprot/P28237 P28237] | ||
+ | ** [http://www.uniprot.org/uniprot/P42757 P42757] | ||
+ | ** [http://www.uniprot.org/uniprot/Q40024 Q40024] | ||
+ | ** [http://www.uniprot.org/uniprot/O24174 O24174] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43828 Q43828] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43829 Q43829] | ||
+ | ** [http://www.uniprot.org/uniprot/O22477 O22477] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=betaine aldehyde dehydrogenase|betaine-aldehyde dehydrogenase}} | ||
+ | {{#set: ec-number=ec-1.2.1.8}} | ||
+ | {{#set: nb gene associated=7}} | ||
+ | {{#set: nb pathway associated=5}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:34, 5 January 2021
Contents
Reaction BADH-RXN
- direction:
- reversible
- common-name:
- betaine-aldehyde dehydrogenase
- betaine aldehyde dehydrogenase
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ00435
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ11330
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ22552
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ11331
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ09287
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ06047
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ05897
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY1F-353, glycine betaine biosynthesis III (plants):
- 1 reactions found over 3 reactions in the full pathway
- BETSYN-PWY, glycine betaine biosynthesis I (Gram-negative bacteria):
- 2 reactions found over 2 reactions in the full pathway
- CHOLINE-BETAINE-ANA-PWY, choline degradation I:
- 2 reactions found over 2 reactions in the full pathway
- PWY-3722, glycine betaine biosynthesis II (Gram-positive bacteria):
- 1 reactions found over 2 reactions in the full pathway
- PWY-7494, choline degradation IV:
- 1 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: