Difference between revisions of "PYRUVATE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MANNPISOM-RXN MANNPISOM-RXN] == * direction: ** reversible * common-name: ** mannose-6-phosphate is...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIDOTRANS-RXN GLUTAMIDOTRANS-RXN] == * direction: ** left-to-right * common-name: ** imidazole...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MANNPISOM-RXN MANNPISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMIDOTRANS-RXN GLUTAMIDOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** mannose-6-phosphate isomerase
+
** imidazoleglycerol-phosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.3.1.8 ec-5.3.1.8]
+
** [http://enzyme.expasy.org/EC/4.3.2.m2 ec-4.3.2.m2]
 +
* synonymous:
 +
** imidazole glycerol phosphate synthase cyclase subunit
 +
** imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)
 +
** imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-15979]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
+
* 1 [[GLN]][c] '''+''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[AICAR]][c] '''+''' 1 [[D-ERYTHRO-IMIDAZOLE-GLYCEROL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19186]]
−
* Gene: [[SJ15069]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01610]]
+
* Gene: [[SJ12953]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ22044]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15067]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3861]], mannitol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3861 PWY-3861]
+
* [[HISTSYN-PWY]], L-histidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=HISTSYN-PWY HISTSYN-PWY]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-5659]], GDP-mannose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5659 PWY-5659]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7586]], &beta;-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7586 PWY-7586]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7456]], &beta;-(1,4)-mannan degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7456 PWY-7456]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6992]], 1,5-anhydrofructose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6992 PWY-6992]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-882]], L-ascorbate biosynthesis I (L-galactose pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-882 PWY-882]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-3881]], mannitol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3881 PWY-3881]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[MANNCAT-PWY]], D-mannose degradation: [http://metacyc.org/META/NEW-IMAGE?object=MANNCAT-PWY MANNCAT-PWY]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12359 12359]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24793 24793]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00772 R00772]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04558 R04558]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P07874 P07874]
+
{{#set: common-name=imidazoleglycerol-phosphate synthase}}
−
** [http://www.uniprot.org/uniprot/P29951 P29951]
+
{{#set: ec-number=ec-4.3.2.m2}}
−
** [http://www.uniprot.org/uniprot/P39841 P39841]
+
{{#set: synonymous=imidazole glycerol phosphate synthase cyclase subunit|imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)|imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)}}
−
** [http://www.uniprot.org/uniprot/P00946 P00946]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P25081 P25081]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/Q52206 Q52206]
 
−
** [http://www.uniprot.org/uniprot/P34949 P34949]
 
−
** [http://www.uniprot.org/uniprot/P29952 P29952]
 
−
** [http://www.uniprot.org/uniprot/P34948 P34948]
 
−
** [http://www.uniprot.org/uniprot/Q55183 Q55183]
 
−
** [http://www.uniprot.org/uniprot/P73377 P73377]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=mannose-6-phosphate isomerase}}
 
−
{{#set: ec-number=ec-5.3.1.8}}
 
−
{{#set: nb gene associated=4}}
 
−
{{#set: nb pathway associated=8}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction GLUTAMIDOTRANS-RXN

  • direction:
    • left-to-right
  • common-name:
    • imidazoleglycerol-phosphate synthase
  • ec-number:
  • synonymous:
    • imidazole glycerol phosphate synthase cyclase subunit
    • imidazole glycerol phosphate synthase cyclase subunit (ec 4.1.3.-)
    • imidazole glycerol phosphate synthase amidotransferase subunit (ec 2.4.2.-)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links






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