Difference between revisions of "PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN"

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(Created page with "Category:reaction == Reaction CATAL-RXN == * direction: ** left-to-right * common-name: ** catalase * ec-number: ** [http://enzyme.expasy.org/EC/1.11.1.6 ec-1.11.1.6] ** [...")
(Created page with "Category:reaction == Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN == * direction: ** reversible * common-name: ** pyruvate phosphate dikinase * ec-number: ** [http://enzym...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CATAL-RXN ==
+
== Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** catalase
+
** pyruvate phosphate dikinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.11.1.6 ec-1.11.1.6]
+
** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1]
−
** [http://enzyme.expasy.org/EC/1.11.1.21 ec-1.11.1.21]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[HYDROGEN-PEROXIDE]][c] '''=>''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03402]]
+
* Gene: [[SJ06759]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 19: Line 18:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5506]], methanol oxidation to formaldehyde IV:
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[DETOX1-PWY-1]], reactive oxygen species degradation:
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[DETOX1-PWY]], superoxide radicals degradation:
+
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* METANETX-RXN : MNXR96455
+
* METANETX-RXN : MNXR103107
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20310 20310]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00009 R00009]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00206 R00206]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11934 P11934]
+
** [http://www.uniprot.org/uniprot/Q7M0I6 Q7M0I6]
−
** [http://www.uniprot.org/uniprot/P24270 P24270]
+
** [http://www.uniprot.org/uniprot/O23404 O23404]
−
** [http://www.uniprot.org/uniprot/P21179 P21179]
+
** [http://www.uniprot.org/uniprot/Q9WYA9 Q9WYA9]
−
** [http://www.uniprot.org/uniprot/P24168 P24168]
+
** [http://www.uniprot.org/uniprot/P22983 P22983]
−
** [http://www.uniprot.org/uniprot/Q7M184 Q7M184]
+
** [http://www.uniprot.org/uniprot/Q41846 Q41846]
−
** [http://www.uniprot.org/uniprot/P0A327 P0A327]
+
** [http://www.uniprot.org/uniprot/Q42367 Q42367]
−
** [http://www.uniprot.org/uniprot/P45737 P45737]
+
** [http://www.uniprot.org/uniprot/Q42368 Q42368]
−
** [http://www.uniprot.org/uniprot/P42321 P42321]
+
** [http://www.uniprot.org/uniprot/P22221 P22221]
−
** [http://www.uniprot.org/uniprot/O28050 O28050]
+
** [http://www.uniprot.org/uniprot/P37213 P37213]
−
** [http://www.uniprot.org/uniprot/Q59337 Q59337]
+
** [http://www.uniprot.org/uniprot/Q42736 Q42736]
−
** [http://www.uniprot.org/uniprot/P77872 P77872]
+
** [http://www.uniprot.org/uniprot/Q42910 Q42910]
−
** [http://www.uniprot.org/uniprot/P00432 P00432]
+
** [http://www.uniprot.org/uniprot/Q39734 Q39734]
−
** [http://www.uniprot.org/uniprot/P15202 P15202]
+
** [http://www.uniprot.org/uniprot/Q39735 Q39735]
−
** [http://www.uniprot.org/uniprot/P06115 P06115]
+
** [http://www.uniprot.org/uniprot/O24612 O24612]
−
** [http://www.uniprot.org/uniprot/P07820 P07820]
+
** [http://www.uniprot.org/uniprot/O85840 O85840]
−
** [http://www.uniprot.org/uniprot/P17750 P17750]
 
−
** [http://www.uniprot.org/uniprot/P13029 P13029]
 
−
** [http://www.uniprot.org/uniprot/P17336 P17336]
 
−
** [http://www.uniprot.org/uniprot/P04040 P04040]
 
−
** [http://www.uniprot.org/uniprot/P25890 P25890]
 
−
** [http://www.uniprot.org/uniprot/P04762 P04762]
 
−
** [http://www.uniprot.org/uniprot/P29756 P29756]
 
−
** [http://www.uniprot.org/uniprot/P44390 P44390]
 
−
** [http://www.uniprot.org/uniprot/P42234 P42234]
 
−
** [http://www.uniprot.org/uniprot/Q9JRF5 Q9JRF5]
 
−
** [http://www.uniprot.org/uniprot/P94377 P94377]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKX5 Q9ZKX5]
 
−
** [http://www.uniprot.org/uniprot/Q59296 Q59296]
 
−
** [http://www.uniprot.org/uniprot/P55306 P55306]
 
−
** [http://www.uniprot.org/uniprot/P26901 P26901]
 
−
** [http://www.uniprot.org/uniprot/P14412 P14412]
 
−
** [http://www.uniprot.org/uniprot/P07145 P07145]
 
−
** [http://www.uniprot.org/uniprot/P17598 P17598]
 
−
** [http://www.uniprot.org/uniprot/Q41136 Q41136]
 
−
** [http://www.uniprot.org/uniprot/P30567 P30567]
 
−
** [http://www.uniprot.org/uniprot/P30263 P30263]
 
−
** [http://www.uniprot.org/uniprot/P29422 P29422]
 
−
** [http://www.uniprot.org/uniprot/P30266 P30266]
 
−
** [http://www.uniprot.org/uniprot/P37743 P37743]
 
−
** [http://www.uniprot.org/uniprot/P33569 P33569]
 
−
** [http://www.uniprot.org/uniprot/P18123 P18123]
 
−
** [http://www.uniprot.org/uniprot/P55303 P55303]
 
−
** [http://www.uniprot.org/uniprot/Q01297 Q01297]
 
−
** [http://www.uniprot.org/uniprot/P49318 P49318]
 
−
** [http://www.uniprot.org/uniprot/P18122 P18122]
 
−
** [http://www.uniprot.org/uniprot/P49315 P49315]
 
−
** [http://www.uniprot.org/uniprot/Q27710 Q27710]
 
−
** [http://www.uniprot.org/uniprot/P45739 P45739]
 
−
** [http://www.uniprot.org/uniprot/P0A323 P0A323]
 
−
** [http://www.uniprot.org/uniprot/P55307 P55307]
 
−
** [http://www.uniprot.org/uniprot/P55308 P55308]
 
−
** [http://www.uniprot.org/uniprot/P55305 P55305]
 
−
** [http://www.uniprot.org/uniprot/P50979 P50979]
 
−
** [http://www.uniprot.org/uniprot/Q55110 Q55110]
 
−
** [http://www.uniprot.org/uniprot/P12365 P12365]
 
−
** [http://www.uniprot.org/uniprot/P73911 P73911]
 
−
** [http://www.uniprot.org/uniprot/P77038 P77038]
 
−
** [http://www.uniprot.org/uniprot/P25819 P25819]
 
−
** [http://www.uniprot.org/uniprot/O48562 O48562]
 
−
** [http://www.uniprot.org/uniprot/Q43206 Q43206]
 
−
** [http://www.uniprot.org/uniprot/O22472 O22472]
 
−
** [http://www.uniprot.org/uniprot/P30265 P30265]
 
−
** [http://www.uniprot.org/uniprot/P48351 P48351]
 
−
** [http://www.uniprot.org/uniprot/P48352 P48352]
 
−
** [http://www.uniprot.org/uniprot/Q39633 Q39633]
 
−
** [http://www.uniprot.org/uniprot/Q39634 Q39634]
 
−
** [http://www.uniprot.org/uniprot/P32290 P32290]
 
−
** [http://www.uniprot.org/uniprot/O81336 O81336]
 
−
** [http://www.uniprot.org/uniprot/O81337 O81337]
 
−
** [http://www.uniprot.org/uniprot/P49317 P49317]
 
−
** [http://www.uniprot.org/uniprot/Q27487 Q27487]
 
−
** [http://www.uniprot.org/uniprot/Q8MYL7 Q8MYL7]
 
−
** [http://www.uniprot.org/uniprot/Q9Z598 Q9Z598]
 
−
** [http://www.uniprot.org/uniprot/O61235 O61235]
 
−
** [http://www.uniprot.org/uniprot/O33613 O33613]
 
−
** [http://www.uniprot.org/uniprot/P77948 P77948]
 
−
** [http://www.uniprot.org/uniprot/O73955 O73955]
 
−
** [http://www.uniprot.org/uniprot/O59651 O59651]
 
−
** [http://www.uniprot.org/uniprot/O31066 O31066]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=catalase}}
+
{{#set: common-name=pyruvate phosphate dikinase}}
−
{{#set: ec-number=ec-1.11.1.21|ec-1.11.1.6}}
+
{{#set: ec-number=ec-2.7.9.1}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN

  • direction:
    • reversible
  • common-name:
    • pyruvate phosphate dikinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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