Difference between revisions of "PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN"

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(Created page with "Category:reaction == Reaction TYROSINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tyrosine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
(Created page with "Category:reaction == Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN == * direction: ** reversible * common-name: ** pyruvate phosphate dikinase * ec-number: ** [http://enzym...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TYROSINE--TRNA-LIGASE-RXN ==
+
== Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** tyrosine-trna ligase
+
** pyruvate phosphate dikinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.1 ec-6.1.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TYR]][c] '''+''' 1 [[TYR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02072]]
+
* Gene: [[SJ06759]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18555]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02063]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR103107
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10221 10221]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00206 R00206]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P28669 P28669]
+
** [http://www.uniprot.org/uniprot/Q7M0I6 Q7M0I6]
−
** [http://www.uniprot.org/uniprot/P22326 P22326]
+
** [http://www.uniprot.org/uniprot/O23404 O23404]
−
** [http://www.uniprot.org/uniprot/P36421 P36421]
+
** [http://www.uniprot.org/uniprot/Q9WYA9 Q9WYA9]
−
** [http://www.uniprot.org/uniprot/P41256 P41256]
+
** [http://www.uniprot.org/uniprot/P22983 P22983]
−
** [http://www.uniprot.org/uniprot/O51343 O51343]
+
** [http://www.uniprot.org/uniprot/Q41846 Q41846]
−
** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
+
** [http://www.uniprot.org/uniprot/Q42367 Q42367]
−
** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
+
** [http://www.uniprot.org/uniprot/Q42368 Q42368]
−
** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
+
** [http://www.uniprot.org/uniprot/P22221 P22221]
−
** [http://www.uniprot.org/uniprot/P47693 P47693]
+
** [http://www.uniprot.org/uniprot/P37213 P37213]
−
** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
+
** [http://www.uniprot.org/uniprot/Q42736 Q42736]
−
** [http://www.uniprot.org/uniprot/P43836 P43836]
+
** [http://www.uniprot.org/uniprot/Q42910 Q42910]
−
** [http://www.uniprot.org/uniprot/O83806 O83806]
+
** [http://www.uniprot.org/uniprot/Q39734 Q39734]
−
** [http://www.uniprot.org/uniprot/Q57834 Q57834]
+
** [http://www.uniprot.org/uniprot/Q39735 Q39735]
−
** [http://www.uniprot.org/uniprot/P56417 P56417]
+
** [http://www.uniprot.org/uniprot/O24612 O24612]
−
** [http://www.uniprot.org/uniprot/O67632 O67632]
+
** [http://www.uniprot.org/uniprot/O85840 O85840]
−
** [http://www.uniprot.org/uniprot/O58739 O58739]
 
−
** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
 
−
** [http://www.uniprot.org/uniprot/O27795 O27795]
 
−
** [http://www.uniprot.org/uniprot/O84065 O84065]
 
−
** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
 
−
** [http://www.uniprot.org/uniprot/P48527 P48527]
 
−
** [http://www.uniprot.org/uniprot/Q49900 Q49900]
 
−
** [http://www.uniprot.org/uniprot/P75122 P75122]
 
−
** [http://www.uniprot.org/uniprot/P73141 P73141]
 
−
** [http://www.uniprot.org/uniprot/P73144 P73144]
 
−
** [http://www.uniprot.org/uniprot/P95982 P95982]
 
−
** [http://www.uniprot.org/uniprot/P00952 P00952]
 
−
** [http://www.uniprot.org/uniprot/P04077 P04077]
 
−
** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
 
−
** [http://www.uniprot.org/uniprot/P12063 P12063]
 
−
** [http://www.uniprot.org/uniprot/P93363 P93363]
 
−
** [http://www.uniprot.org/uniprot/O14055 O14055]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=tyrosine-trna ligase}}
+
{{#set: common-name=pyruvate phosphate dikinase}}
−
{{#set: ec-number=ec-6.1.1.1}}
+
{{#set: ec-number=ec-2.7.9.1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN

  • direction:
    • reversible
  • common-name:
    • pyruvate phosphate dikinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-241, C4 photosynthetic carbon assimilation cycle, NADP-ME type:
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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