Difference between revisions of "PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-15089 == * direction: ** left-to-right * common-name: ** acylglycerol lipase ** 1-oleoylglycerol lipase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction TYROSINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** tyrosine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-15089 ==
+
== Reaction TYROSINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acylglycerol lipase
+
** tyrosine-trna ligase
−
** 1-oleoylglycerol lipase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.1.23 ec-3.1.1.23]
+
** [http://enzyme.expasy.org/EC/6.1.1.1 ec-6.1.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-11690]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[GLYCEROL]][c] '''+''' 1 [[OLEATE-CPD]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[TYR]][c] '''+''' 1 [[TYR-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-TYR-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ02072]]
−
* Gene: [[SJ01235]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02790]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ16427]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22328]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18555]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03481]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ02063]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ11012]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19199]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18663]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07752]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15654]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7420]], monoacylglycerol metabolism (yeast):
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10221 10221]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02918 R02918]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P28669 P28669]
 +
** [http://www.uniprot.org/uniprot/P22326 P22326]
 +
** [http://www.uniprot.org/uniprot/P36421 P36421]
 +
** [http://www.uniprot.org/uniprot/P41256 P41256]
 +
** [http://www.uniprot.org/uniprot/O51343 O51343]
 +
** [http://www.uniprot.org/uniprot/Q9PN27 Q9PN27]
 +
** [http://www.uniprot.org/uniprot/Q9CIH5 Q9CIH5]
 +
** [http://www.uniprot.org/uniprot/Q9ZL69 Q9ZL69]
 +
** [http://www.uniprot.org/uniprot/P47693 P47693]
 +
** [http://www.uniprot.org/uniprot/Q9ZCZ4 Q9ZCZ4]
 +
** [http://www.uniprot.org/uniprot/P43836 P43836]
 +
** [http://www.uniprot.org/uniprot/O83806 O83806]
 +
** [http://www.uniprot.org/uniprot/Q57834 Q57834]
 +
** [http://www.uniprot.org/uniprot/P56417 P56417]
 +
** [http://www.uniprot.org/uniprot/O67632 O67632]
 +
** [http://www.uniprot.org/uniprot/O58739 O58739]
 +
** [http://www.uniprot.org/uniprot/Q9WYU8 Q9WYU8]
 +
** [http://www.uniprot.org/uniprot/O27795 O27795]
 +
** [http://www.uniprot.org/uniprot/O84065 O84065]
 +
** [http://www.uniprot.org/uniprot/Q9JVY6 Q9JVY6]
 +
** [http://www.uniprot.org/uniprot/P48527 P48527]
 +
** [http://www.uniprot.org/uniprot/Q49900 Q49900]
 +
** [http://www.uniprot.org/uniprot/P75122 P75122]
 +
** [http://www.uniprot.org/uniprot/P73141 P73141]
 +
** [http://www.uniprot.org/uniprot/P73144 P73144]
 +
** [http://www.uniprot.org/uniprot/P95982 P95982]
 +
** [http://www.uniprot.org/uniprot/P00952 P00952]
 +
** [http://www.uniprot.org/uniprot/P04077 P04077]
 +
** [http://www.uniprot.org/uniprot/P0AGJ9 P0AGJ9]
 +
** [http://www.uniprot.org/uniprot/P12063 P12063]
 +
** [http://www.uniprot.org/uniprot/P93363 P93363]
 +
** [http://www.uniprot.org/uniprot/O14055 O14055]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acylglycerol lipase|1-oleoylglycerol lipase}}
+
{{#set: common-name=tyrosine-trna ligase}}
−
{{#set: ec-number=ec-3.1.1.23}}
+
{{#set: ec-number=ec-6.1.1.1}}
−
{{#set: nb gene associated=10}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction TYROSINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • tyrosine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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