Difference between revisions of "PYRUVDEH-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17105 RXN-17105] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction PMPOXI-RXN == * direction: ** left-to-right * common-name: ** pyridoxamine 5'-phosphate oxidase ** pyridoxamine-phosphate oxidase * ec-number...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17105 RXN-17105] ==
+
== Reaction PMPOXI-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** pyridoxamine 5'-phosphate oxidase
 +
** pyridoxamine-phosphate oxidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.19 ec-1.14.19]
+
** [http://enzyme.expasy.org/EC/1.4.3.5 ec-1.4.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12646]][c] '''+''' 2 [[FERROCYTOCHROME-B5]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-14407]][c] '''+''' 2 [[FERRICYTOCHROME-B5]][c] '''+''' 2 [[WATER]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ08123]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18666]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21118]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03655]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01932]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7725]], arachidonate biosynthesis V (8-detaturase, mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7725 PWY-7725]
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15818 15818]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00277 R00277]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P0AFI7 P0AFI7]
 +
** [http://www.uniprot.org/uniprot/Q9JTZ1 Q9JTZ1]
 +
** [http://www.uniprot.org/uniprot/P44909 P44909]
 +
** [http://www.uniprot.org/uniprot/P38075 P38075]
 +
** [http://www.uniprot.org/uniprot/P74211 P74211]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.14.19}}
+
{{#set: common-name=pyridoxamine-phosphate oxidase|pyridoxamine 5'-phosphate oxidase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-1.4.3.5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina}}

Revision as of 20:41, 18 December 2020

Reaction PMPOXI-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyridoxamine 5'-phosphate oxidase
    • pyridoxamine-phosphate oxidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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