Difference between revisions of "PYRUVDEH-RXN"

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(Created page with "Category:reaction == Reaction ACYLCOADEHYDROG-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:reaction == Reaction PYRUVDEH-RXN == * direction: ** left-to-right * common-name: ** pyruvate dehydrogenase (nad+) * ec-number: ** [http://enzyme.expasy.org/EC/1....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACYLCOADEHYDROG-RXN ==
+
== Reaction PYRUVDEH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa dehydrogenase
+
** pyruvate dehydrogenase (nad+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8]
+
** [http://enzyme.expasy.org/EC/1.2.1 ec-1.2.1]
−
* synonymous:
 
−
** general acyl coa dehydrogenase
 
−
** acyl coenzyme a dehydrogenase
 
−
** fatty acyl coenzyme a dehydrogenase
 
−
** long-chain acyl-coa dehydrogenase
 
−
** medium-chain acyl-coenzyme a dehydrogenase
 
−
** long-chain acyl coenzyme a dehydrogenase
 
−
** fatty-acyl-coa dehydrogenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ03090]]
+
* Gene: [[SJ00971]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19669]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01042]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19470]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13629]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09312]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04334]]
+
* Gene: [[SJ14925]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06456]]
+
* Gene: [[SJ06474]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01215]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ06470]]
+
* Gene: [[SJ10087]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21233]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07451]]
+
* Gene: [[SJ10725]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15262]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13468]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07241]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07909]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21703]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07452]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
+
* [[GLYCOLYSIS-TCA-GLYOX-BYPASS]], superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass:
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
 +
** '''7''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5482]], pyruvate fermentation to acetate II:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5537]], pyruvate fermentation to acetate V:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered):
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR115669
+
* METANETX-RXN : MNXR102425
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28042 28042]
−
* UNIPROT:
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P16219 P16219]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00209 R00209]
−
** [http://www.uniprot.org/uniprot/P45952 P45952]
 
−
** [http://www.uniprot.org/uniprot/P15651 P15651]
 
−
** [http://www.uniprot.org/uniprot/P11310 P11310]
 
−
** [http://www.uniprot.org/uniprot/P08503 P08503]
 
−
** [http://www.uniprot.org/uniprot/Q07417 Q07417]
 
−
** [http://www.uniprot.org/uniprot/Q54857 Q54857]
 
−
** [http://www.uniprot.org/uniprot/P45867 P45867]
 
−
** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3]
 
−
** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6]
 
−
** [http://www.uniprot.org/uniprot/Q96329 Q96329]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa dehydrogenase}}
+
{{#set: common-name=pyruvate dehydrogenase (nad+)}}
−
{{#set: ec-number=ec-1.3.8}}
+
{{#set: ec-number=ec-1.2.1}}
−
{{#set: synonymous=long-chain acyl-coa dehydrogenase|fatty acyl coenzyme a dehydrogenase|acyl coenzyme a dehydrogenase|medium-chain acyl-coenzyme a dehydrogenase|general acyl coa dehydrogenase|fatty-acyl-coa dehydrogenase|long-chain acyl coenzyme a dehydrogenase}}
+
{{#set: nb gene associated=9}}
−
{{#set: nb gene associated=14}}
+
{{#set: nb pathway associated=6}}
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction PYRUVDEH-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyruvate dehydrogenase (nad+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCOLYSIS-TCA-GLYOX-BYPASS, superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass:
    • 3 reactions found over 1 reactions in the full pathway
  • PWY-7218, photosynthetic 3-hydroxybutanoate biosynthesis (engineered):
    • 7 reactions found over 4 reactions in the full pathway
  • PWY-5482, pyruvate fermentation to acetate II:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5537, pyruvate fermentation to acetate V:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered):
    • 8 reactions found over 5 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial):
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR102425
  • RHEA:
  • LIGAND-RXN:





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