Difference between revisions of "Pathwaytools"

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(Created page with "Category:reaction == Reaction RXN-12959 == * direction: ** left-to-right * common-name: ** diacylglycerol kinase (ctp) * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.1...")
(Created page with "Category:reaction == Reaction NITRATE-REDUCTASE-NADH-RXN == * direction: ** left-to-right * common-name: ** nitrate reductase ** nitrate reductase (nadh) * ec-number: ** [...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12959 ==
+
== Reaction NITRATE-REDUCTASE-NADH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** diacylglycerol kinase (ctp)
+
** nitrate reductase
 +
** nitrate reductase (nadh)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.174 ec-2.7.1.174]
+
** [http://enzyme.expasy.org/EC/1.7.1.1 ec-1.7.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CTP]][c] '''+''' 1 [[DIACYLGLYCEROL]][c] '''=>''' 1 [[CDP]][c] '''+''' 1 [[L-PHOSPHATIDATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[NADH]][c] '''+''' 1 [[NITRATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[NITRITE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12148]]
+
* Gene: [[SJ00644]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ12057]]
+
* Gene: [[SJ15446]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRIGLSYN-PWY]], diacylglycerol and triacylglycerol biosynthesis:
+
* [[PWY-381]], nitrate reduction II (assimilatory):
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR101964
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17915 17915]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R09944 R09944]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00794 R00794]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25951 25951]
+
** [http://www.uniprot.org/uniprot/Q39607 Q39607]
 +
** [http://www.uniprot.org/uniprot/Q41201 Q41201]
 +
** [http://www.uniprot.org/uniprot/P17569 P17569]
 +
** [http://www.uniprot.org/uniprot/P54233 P54233]
 +
** [http://www.uniprot.org/uniprot/P36841 P36841]
 +
** [http://www.uniprot.org/uniprot/P27967 P27967]
 +
** [http://www.uniprot.org/uniprot/P27969 P27969]
 +
** [http://www.uniprot.org/uniprot/P11035 P11035]
 +
** [http://www.uniprot.org/uniprot/P08509 P08509]
 +
** [http://www.uniprot.org/uniprot/P11605 P11605]
 +
** [http://www.uniprot.org/uniprot/P23312 P23312]
 +
** [http://www.uniprot.org/uniprot/P17570 P17570]
 +
** [http://www.uniprot.org/uniprot/P16081 P16081]
 +
** [http://www.uniprot.org/uniprot/Q01170 Q01170]
 +
** [http://www.uniprot.org/uniprot/P39865 P39865]
 +
** [http://www.uniprot.org/uniprot/P11832 P11832]
 +
** [http://www.uniprot.org/uniprot/P39869 P39869]
 +
** [http://www.uniprot.org/uniprot/Q43265 Q43265]
 +
** [http://www.uniprot.org/uniprot/P43101 P43101]
 +
** [http://www.uniprot.org/uniprot/P43100 P43100]
 +
** [http://www.uniprot.org/uniprot/Q42497 Q42497]
 +
** [http://www.uniprot.org/uniprot/P39866 P39866]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=diacylglycerol kinase (ctp)}}
+
{{#set: common-name=nitrate reductase (nadh)|nitrate reductase}}
−
{{#set: ec-number=ec-2.7.1.174}}
+
{{#set: ec-number=ec-1.7.1.1}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction NITRATE-REDUCTASE-NADH-RXN

  • direction:
    • left-to-right
  • common-name:
    • nitrate reductase
    • nitrate reductase (nadh)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-381, nitrate reduction II (assimilatory):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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