Difference between revisions of "Pathwaytools"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENTDB-RXN ENTDB-RXN] == * direction: ** left-to-right * common-name: ** holo-[acyl-carrier-protein]...")
(Created page with "{{#ask: Category:reaction reconstruction tool::pathwaytools | ?common-name | ?ec-number | ?reconstruction category | ?reconstruction source | ?reconstruction comment |...")
 
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[[Category:reaction]]
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{{#ask: [[Category:reaction]] [[reconstruction tool::pathwaytools]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ENTDB-RXN ENTDB-RXN] ==
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| ?common-name
* direction:
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| ?ec-number
** left-to-right
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| ?reconstruction category
* common-name:
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| ?reconstruction source
** holo-[acyl-carrier-protein] synthase
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| ?reconstruction comment
* ec-number:
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| ?nb gene associated
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
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| ?nb pathway associated
== Reaction formula ==
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}}
* 1 [[Apo-EntB]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[Holo-EntB]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
* Gene: [[SJ00669]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ19702]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
* [[ENTBACSYN-PWY]], enterobactin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ENTBACSYN-PWY ENTBACSYN-PWY]
 
** '''3''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
{{#set: direction=left-to-right}}
 
{{#set: common-name=holo-[acyl-carrier-protein] synthase}}
 
{{#set: ec-number=ec-2.7.8.7}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:18, 18 March 2021