Difference between revisions of "Polynucleotide-Holder"
Jump to navigation
Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IRON--CYTOCHROME-C-REDUCTASE-RXN IRON--CYTOCHROME-C-REDUCTASE-RXN] == * direction: ** reversible *...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == * direction: ** left-to-right * common-name: ** violaxanthin de-epoxidase **...") |
||
| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7985 RXN-7985] == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** violaxanthin de-epoxidase |
| − | * | + | ** antheraxanthin de-epoxidase |
| − | ** | + | * synonymous: |
| + | ** vde | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ASCORBATE]][c] '''+''' 1 [[CPD1F-131]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 1 [[L-DEHYDRO-ASCORBATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ19927]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ03764]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | * Gene: [[SJ20456]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-5945]], violaxanthin, antheraxanthin and zeaxanthin interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5945 PWY-5945] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21801 21801] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07179 R07179] |
| − | {{#set: direction= | + | {{#set: direction=left-to-right}} |
| − | {{#set: common-name= | + | {{#set: common-name=violaxanthin de-epoxidase|antheraxanthin de-epoxidase}} |
| − | {{#set: | + | {{#set: synonymous=vde}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 14:24, 26 August 2019
Contents
Reaction RXN-7985
- direction:
- left-to-right
- common-name:
- violaxanthin de-epoxidase
- antheraxanthin de-epoxidase
- synonymous:
- vde
Reaction formula
- 1 ASCORBATE[c] + 1 CPD1F-131[c] + 1 PROTON[c] => 1 CPD1F-130[c] + 1 L-DEHYDRO-ASCORBATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ19927
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ03764
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ20456
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5945, violaxanthin, antheraxanthin and zeaxanthin interconversion: PWY-5945
- 4 reactions found over 4 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
