Difference between revisions of "Pre-tRNA-5-prime-half-molecules"

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(Created page with "Category:gene == Gene SJ03206 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * 4.2.2.10-RXN ** Catego...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] == * direction: ** reversibl...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ03206 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERVAL-RXN BRANCHED-CHAINAMINOTRANSFERVAL-RXN] ==
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== Organism(s) associated with this gene  ==
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* direction:
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* [[S.japonica_carotenoid_curated]]
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** reversible
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== Reaction(s) associated ==
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* common-name:
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* [[4.2.2.10-RXN]]
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** valine transaminase
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
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== Reaction formula ==
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
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== Gene(s) associated with this reaction  ==
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* Gene: [[SJ17677]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-14897]]
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* Gene: [[SJ06412]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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* Gene: [[SJ04586]]
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* [[PWY-7243]]
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** Category: [[annotation]]
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** '''1''' reactions found over '''n.a''' reactions in the full pathway
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** Category: [[orthology]]
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{{#set: nb reaction associated=2}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb pathway associated=1}}
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== Pathway(s) ==
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* [[VALDEG-PWY]], L-valine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=VALDEG-PWY VALDEG-PWY]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=ALANINE-VALINESYN-PWY ALANINE-VALINESYN-PWY]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5057]], L-valine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5057 PWY-5057]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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{{#set: direction=reversible}}
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{{#set: common-name=valine transaminase}}
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{{#set: ec-number=ec-2.6.1.42}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN

  • direction:
    • reversible
  • common-name:
    • valine transaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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