Difference between revisions of "QOR-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11881 RXN-11881] == * direction: ** left-to-right * common-name: ** 4α,14α-dimethyl...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] == * direction: ** left-to-right * commo...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11881 RXN-11881] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase
+
** diphthine—ammonia ligase
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** 4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol demethylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.13.70 ec-1.14.13.70]
+
** [http://enzyme.expasy.org/EC/6.3.1.14 ec-6.3.1.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12852]][c] '''+''' 3 [[NADPH]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CPD-12853]][c] '''+''' 1 [[FORMATE]][c] '''+''' 3 [[NADP]][c] '''+''' 4 [[WATER]][c]
+
* 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[DIPHTINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[DIPHTHAMIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05072]]
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* Gene: [[SJ03200]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6482]], diphthamide biosynthesis I (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6482 PWY-6482]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7546]], diphthamide biosynthesis II (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7546 PWY-7546]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19754 19754]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03613 R03613]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol demethylase|4α,14α-dimethyl-5α-cholesta-8,24-dien-3β-ol 14-demethylase}}
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{{#set: common-name=diphthine—ammonia ligase}}
−
{{#set: ec-number=ec-1.14.13.70}}
+
{{#set: ec-number=ec-6.3.1.14}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction DIPHTINE--AMMONIA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • diphthine—ammonia ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6482, diphthamide biosynthesis I (archaea): PWY-6482
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7546, diphthamide biosynthesis II (eukaryotes): PWY-7546
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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