Difference between revisions of "QUEUINE"

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(Created page with "Category:gene == Gene SJ06446 == * transcription-direction: ** negative * right-end-position: ** 22392 * left-end-position: ** 12545 * centisome-position: ** 2.6382365...")
 
(Created page with "Category:gene == Gene SJ22398 == * transcription-direction: ** negative * right-end-position: ** 175362 * left-end-position: ** 158942 * centisome-position: ** 89.64934...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06446 ==
+
== Gene SJ22398 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 22392
+
** 175362
 
* left-end-position:
 
* left-end-position:
−
** 12545
+
** 158942
 
* centisome-position:
 
* centisome-position:
−
** 2.6382365    
+
** 89.64934    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]]
+
* [[H2NEOPTERINALDOL-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[H2PTERIDINEPYROPHOSPHOKIN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[LTAA-RXN]]
+
* [[H2PTEROATESYNTH-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14146]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9896]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[THREONINE-ALDOLASE-RXN]]
+
* [[RXN-10857]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-15733]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
+
* [[PWY-6797]]
−
** '''2''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6100]]
+
* [[PWY-6148]]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-5436]]
+
* [[PWY-6147]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[GLYSYN-THR-PWY]]
+
* [[PWY-7539]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7853]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7852]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6614]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=22392}}
+
{{#set: right-end-position=175362}}
−
{{#set: left-end-position=12545}}
+
{{#set: left-end-position=158942}}
−
{{#set: centisome-position=2.6382365   }}
+
{{#set: centisome-position=89.64934   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=5}}
 
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=7}}

Revision as of 14:23, 26 August 2019

Gene SJ22398

  • transcription-direction:
    • negative
  • right-end-position:
    • 175362
  • left-end-position:
    • 158942
  • centisome-position:
    • 89.64934

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6148
    • 2 reactions found over 14 reactions in the full pathway
  • PWY-6147
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7853
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7852
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6614
    • 3 reactions found over 3 reactions in the full pathway




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