Difference between revisions of "R-2-METHYLMALATE-DEHYDRATASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ACID-PHOSPHATASE-RXN == * direction: ** left-to-right * common-name: ** acid phosphatase ** acid phosphatase / phosphotransferase * ec-number...")
(Created page with "Category:reaction == Reaction R-2-METHYLMALATE-DEHYDRATASE-RXN == * direction: ** reversible * common-name: ** (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming) * e...")
 
(4 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACID-PHOSPHATASE-RXN ==
+
== Reaction R-2-METHYLMALATE-DEHYDRATASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** acid phosphatase
+
** (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)
−
** acid phosphatase / phosphotransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.2 ec-3.1.3.2]
+
** [http://enzyme.expasy.org/EC/4.2.1.35 ec-4.2.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Orthophosphoric-Monoesters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CPD-31]][c] '''<=>''' 1 [[2-METHYLMALEATE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ09771]]
−
* Gene: [[SJ22353]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ22396]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20260]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02191]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20261]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09354]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06607]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05429]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12563]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05430]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ01171]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04752]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ17787]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01423]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17788]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04753]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07345]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6348]], phosphate acquisition:
+
* [[PWY-5101]], L-isoleucine biosynthesis II:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7698]], 2,5-xylenol and 3,5-xylenol degradation:
 +
** '''1''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR108509
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15018 15018]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22332 22332]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00626 R00626]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03896 R03896]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P08091 P08091]
+
{{#set: common-name=(r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)}}
−
** [http://www.uniprot.org/uniprot/P14924 P14924]
+
{{#set: ec-number=ec-4.2.1.35}}
−
** [http://www.uniprot.org/uniprot/P20611 P20611]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P26976 P26976]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P29288 P29288]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P09889 P09889]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q7M4X4 Q7M4X4]
 
−
** [http://www.uniprot.org/uniprot/P07102 P07102]
 
−
** [http://www.uniprot.org/uniprot/Q12546 Q12546]
 
−
** [http://www.uniprot.org/uniprot/Q01652 Q01652]
 
−
** [http://www.uniprot.org/uniprot/P52291 P52291]
 
−
** [http://www.uniprot.org/uniprot/Q7M4U8 Q7M4U8]
 
−
** [http://www.uniprot.org/uniprot/P20646 P20646]
 
−
** [http://www.uniprot.org/uniprot/P15309 P15309]
 
−
** [http://www.uniprot.org/uniprot/P37274 P37274]
 
−
** [http://www.uniprot.org/uniprot/Q05117 Q05117]
 
−
** [http://www.uniprot.org/uniprot/P34755 P34755]
 
−
** [http://www.uniprot.org/uniprot/P20584 P20584]
 
−
** [http://www.uniprot.org/uniprot/P00635 P00635]
 
−
** [http://www.uniprot.org/uniprot/P24031 P24031]
 
−
** [http://www.uniprot.org/uniprot/P26975 P26975]
 
−
** [http://www.uniprot.org/uniprot/P11117 P11117]
 
−
** [http://www.uniprot.org/uniprot/Q01682 Q01682]
 
−
** [http://www.uniprot.org/uniprot/P24638 P24638]
 
−
** [http://www.uniprot.org/uniprot/Q7M1H4 Q7M1H4]
 
−
** [http://www.uniprot.org/uniprot/P13686 P13686]
 
−
** [http://www.uniprot.org/uniprot/P28581 P28581]
 
−
** [http://www.uniprot.org/uniprot/P30887 P30887]
 
−
** [http://www.uniprot.org/uniprot/P38693 P38693]
 
−
** [http://www.uniprot.org/uniprot/O24319 O24319]
 
−
** [http://www.uniprot.org/uniprot/P35842 P35842]
 
−
** [http://www.uniprot.org/uniprot/Q9VAD0 Q9VAD0]
 
−
** [http://www.uniprot.org/uniprot/Q9SW12 Q9SW12]
 
−
** [http://www.uniprot.org/uniprot/P27061 P27061]
 
−
** [http://www.uniprot.org/uniprot/P44009 P44009]
 
−
** [http://www.uniprot.org/uniprot/Q9ZS50 Q9ZS50]
 
−
** [http://www.uniprot.org/uniprot/Q9SDZ9 Q9SDZ9]
 
−
** [http://www.uniprot.org/uniprot/Q9XF09 Q9XF09]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=acid phosphatase / phosphotransferase|acid phosphatase}}
 
−
{{#set: ec-number=ec-3.1.3.2}}
 
−
{{#set: nb gene associated=16}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction R-2-METHYLMALATE-DEHYDRATASE-RXN

  • direction:
    • reversible
  • common-name:
    • (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5101, L-isoleucine biosynthesis II:
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-7698, 2,5-xylenol and 3,5-xylenol degradation:
    • 1 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108509
  • RHEA:
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=R-2-METHYLMALATE-DEHYDRATASE-RXN&oldid=141628"