Difference between revisions of "R05819"

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(Created page with "Category:reaction == Reaction 2.8.2.30-RXN == * direction: ** left-to-right * common-name: ** [heparan sulfate]-glucosamine 3-o-sulfotransferase * ec-number: ** [http://en...")
(Created page with "Category:reaction == Reaction R05819 == * direction: ** reversible * common-name: ** phycoerythrobilin:ferredoxin oxidoreductase == Reaction formula == * 1.0 1516-DIHYDR...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction 2.8.2.30-RXN ==
+
== Reaction R05819 ==
 
* direction:
 
* direction:
** left-to-right
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** reversible
 
* common-name:
 
* common-name:
** [heparan sulfate]-glucosamine 3-o-sulfotransferase
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** phycoerythrobilin:ferredoxin oxidoreductase
* ec-number:
 
** [http://enzyme.expasy.org/EC/2.8.2.30 ec-2.8.2.30]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[HEPARIN-GLUCOSAMINE]][c] '''+''' 1 [[PAPS]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[HEPARIN-GLUCOSAMINE-3-O-SULFATE]][c] '''+''' 1 [[PROTON]][c]
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* 1.0 [[1516-DIHYDROBILIVERDIN]][h] '''+''' 1.0 [[Reduced-ferredoxins]][h] '''<=>''' 1.0 [[3Z-PHYCOERYTHROBILIN]][h] '''+''' 1.0 [[Oxidized-ferredoxins]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ07694]]
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* Gene: [[SJ04581]]
** Category: [[annotation]]
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** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ00944]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ17721]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6558]], heparan sulfate biosynthesis (late stages):
 
** '''7''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
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{{#set: direction=reversible}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15462 15462]
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{{#set: common-name=phycoerythrobilin:ferredoxin oxidoreductase}}
* LIGAND-RXN:
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{{#set: nb gene associated=1}}
** [http://www.genome.jp/dbget-bin/www_bget?R05798 R05798]
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{{#set: nb pathway associated=0}}
{{#set: direction=left-to-right}}
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{{#set: reconstruction category=orthology}}
{{#set: common-name=[heparan sulfate]-glucosamine 3-o-sulfotransferase}}
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{{#set: reconstruction tool=pantograph}}
{{#set: ec-number=ec-2.8.2.30}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:19, 18 March 2021

Reaction R05819

  • direction:
    • reversible
  • common-name:
    • phycoerythrobilin:ferredoxin oxidoreductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links