Difference between revisions of "R145-RXN"

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(Created page with "Category:reaction == Reaction GPPSYN-RXN == * direction: ** reversible * common-name: ** geranyl diphosphate synthase ** prenyltransferase ** dimethylallyltranstransferase...")
(Created page with "Category:reaction == Reaction 2.7.7.8-RXN == * direction: ** reversible * common-name: ** polynucleotide phosphorylase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.8...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GPPSYN-RXN ==
+
== Reaction 2.7.7.8-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** geranyl diphosphate synthase
+
** polynucleotide phosphorylase
−
** prenyltransferase
 
−
** dimethylallyltranstransferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.1 ec-2.5.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.7.8 ec-2.7.7.8]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-4211]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c] '''<=>''' 1 [[GERANYL-PP]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Pi]][c] '''+''' 1 [[ssRNAs]][c] '''<=>''' 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[ssRNAs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ10890]]
−
* Gene: [[SJ20033]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18424]]
+
* Gene: [[SJ07492]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03479]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02885]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10781]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10418]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00173]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ14408]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17982]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19255]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09945]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18127]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15410]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01234]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07213]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04802]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18388]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18409]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06255]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09061]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10333]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10346]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00009]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20712]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13532]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[PWY-6383]], mono-trans, poly-cis decaprenyl phosphate biosynthesis:
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7410]], ipsdienol biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7736]], stellatic acid biosynthesis:
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5122]], geranyl diphosphate biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7141]], (3S)-linalool biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7659]], viridicatumtoxin biosynthesis:
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7709]], (3R)-linalool biosynthesis:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7182]], linalool biosynthesis I:
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22408 22408]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22099 22099]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01658 R01658]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07282 R07282]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08524 P08524]
+
** [http://www.uniprot.org/uniprot/P44584 P44584]
−
** [http://www.uniprot.org/uniprot/P05369 P05369]
+
** [http://www.uniprot.org/uniprot/Q9PN44 Q9PN44]
−
** [http://www.uniprot.org/uniprot/P14324 P14324]
+
** [http://www.uniprot.org/uniprot/P05055 P05055]
−
** [http://www.uniprot.org/uniprot/P46376 P46376]
+
** [http://www.uniprot.org/uniprot/Q9JV72 Q9JV72]
−
** [http://www.uniprot.org/uniprot/Q45220 Q45220]
+
** [http://www.uniprot.org/uniprot/P41121 P41121]
−
** [http://www.uniprot.org/uniprot/P49350 P49350]
+
** [http://www.uniprot.org/uniprot/P50849 P50849]
−
** [http://www.uniprot.org/uniprot/Q50891 Q50891]
+
** [http://www.uniprot.org/uniprot/P72659 P72659]
−
** [http://www.uniprot.org/uniprot/P49349 P49349]
+
** [http://www.uniprot.org/uniprot/O24288 O24288]
−
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
+
** [http://www.uniprot.org/uniprot/Q8CJQ6 Q8CJQ6]
−
** [http://www.uniprot.org/uniprot/P49351 P49351]
+
** [http://www.uniprot.org/uniprot/O32966 O32966]
−
** [http://www.uniprot.org/uniprot/P49352 P49352]
 
−
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
 
−
** [http://www.uniprot.org/uniprot/O24241 O24241]
 
−
** [http://www.uniprot.org/uniprot/O24242 O24242]
 
−
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
 
−
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
 
−
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
 
−
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
 
−
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
 
−
** [http://www.uniprot.org/uniprot/P49353 P49353]
 
−
** [http://www.uniprot.org/uniprot/O04882 O04882]
 
−
** [http://www.uniprot.org/uniprot/O65004 O65004]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=prenyltransferase|dimethylallyltranstransferase|geranyl diphosphate synthase}}
+
{{#set: common-name=polynucleotide phosphorylase}}
−
{{#set: ec-number=ec-2.5.1.1}}
+
{{#set: ec-number=ec-2.7.7.8}}
−
{{#set: nb gene associated=24}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:03, 14 January 2021

Reaction 2.7.7.8-RXN

  • direction:
    • reversible
  • common-name:
    • polynucleotide phosphorylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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