Difference between revisions of "R163-RXN"

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(Created page with "Category:reaction == Reaction PREPHENATEDEHYDRAT-RXN == * direction: ** reversible * common-name: ** prephenate dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/4....")
(Created page with "Category:reaction == Reaction GUANINE-DEAMINASE-RXN == * direction: ** left-to-right * common-name: ** guanine deaminase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PREPHENATEDEHYDRAT-RXN ==
+
== Reaction GUANINE-DEAMINASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** prephenate dehydratase
+
** guanine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.51 ec-4.2.1.51]
+
** [http://enzyme.expasy.org/EC/3.5.4.3 ec-3.5.4.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PREPHENATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[GUANINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[XANTHINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00045]]
+
* Gene: [[SJ08613]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PHESYN]], L-phenylalanine biosynthesis I:
+
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''10''' reactions found over '''24''' reactions in the full pathway
−
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants):
+
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
** '''6''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6606]], guanosine nucleotides degradation II:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6608]], guanosine nucleotides degradation III:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21651 21651]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14666 14666]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01373 R01373]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01676 R01676]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P27603 P27603]
+
{{#set: common-name=guanine deaminase}}
−
** [http://www.uniprot.org/uniprot/P43900 P43900]
+
{{#set: ec-number=ec-3.5.4.3}}
−
** [http://www.uniprot.org/uniprot/P21203 P21203]
 
−
** [http://www.uniprot.org/uniprot/Q58054 Q58054]
 
−
** [http://www.uniprot.org/uniprot/Q9CEU2 Q9CEU2]
 
−
** [http://www.uniprot.org/uniprot/Q9PII3 Q9PII3]
 
−
** [http://www.uniprot.org/uniprot/P0A9J8 P0A9J8]
 
−
** [http://www.uniprot.org/uniprot/Q02286 Q02286]
 
−
** [http://www.uniprot.org/uniprot/P43909 P43909]
 
−
** [http://www.uniprot.org/uniprot/P32452 P32452]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=prephenate dehydratase}}
 
−
{{#set: ec-number=ec-4.2.1.51}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 11:20, 15 January 2021

Reaction GUANINE-DEAMINASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • guanine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic):
    • 6 reactions found over 17 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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