Difference between revisions of "R5PDP"
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(Created page with "Category:reaction == Reaction RXN-12693 == * direction: ** reversible * common-name: ** 3-beta-hydroxy-delta5-steroid dehydrogenase * ec-number: ** [http://enzyme.expasy.o...") |
(Created page with "Category:reaction == Reaction SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN == * direction: ** left-to-right * common-name: ** dihydrosphingosine phosphate lyase * ec-number: ** [h...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN | + | == Reaction SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN == |
* direction: | * direction: | ||
| − | ** | + | ** left-to-right |
* common-name: | * common-name: | ||
| − | ** | + | ** dihydrosphingosine phosphate lyase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.1.2.27 ec-4.1.2.27] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[CPD-649]][c] '''=>''' 1 [[PALMITALDEHYDE]][c] '''+''' 1 [[PHOSPHORYL-ETHANOLAMINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | + | * Gene: [[SJ19063]] | |
| − | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
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== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY-7119]], ceramide and sphingolipid recycling and degradation (yeast): |
| − | ** ''' | + | ** '''4''' reactions found over '''16''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
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== External links == | == External links == | ||
| − | {{#set: direction= | + | * RHEA: |
| − | {{#set: common-name= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18594 18594] |
| − | {{#set: ec-number=ec- | + | * LIGAND-RXN: |
| − | {{#set: nb gene associated= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02464 R02464] |
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=dihydrosphingosine phosphate lyase}} | ||
| + | {{#set: ec-number=ec-4.1.2.27}} | ||
| + | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 19:03, 14 January 2021
Contents
Reaction SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN
- direction:
- left-to-right
- common-name:
- dihydrosphingosine phosphate lyase
- ec-number:
Reaction formula
- 1 CPD-649[c] => 1 PALMITALDEHYDE[c] + 1 PHOSPHORYL-ETHANOLAMINE[c]
Gene(s) associated with this reaction
- Gene: SJ19063
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7119, ceramide and sphingolipid recycling and degradation (yeast):
- 4 reactions found over 16 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
