Difference between revisions of "R5PDP"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** dna (cytosine-5-)-methyltransferase * ec-number: **...")
(Created page with "Category:reaction == Reaction R5PDP == * direction: ** left-to-right * common-name: ** ribose-phosphate diphosphokinase == Reaction formula == * 1.0 ATP[c] '''+''' 1.0...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN ==
+
== Reaction R5PDP ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dna (cytosine-5-)-methyltransferase
+
** ribose-phosphate diphosphokinase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.1.1.37 ec-2.1.1.37]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[5-Methylcytosine-DNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[ATP]][c] '''+''' 1.0 [[CPD-15318]][c] '''=>''' 1.0 [[AMP]][c] '''+''' 1.0 [[PROTON]][c] '''+''' 1.0 [[PRPP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ17219]]
−
* Gene: [[SJ03848]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22261]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09533]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00246]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02225]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11154]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03795]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00150]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ11019]]
−
</div>
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* METANETX-RXN : MNXR97535
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13682 13682]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P24581 P24581]
 
−
** [http://www.uniprot.org/uniprot/P05102 P05102]
 
−
** [http://www.uniprot.org/uniprot/P05101 P05101]
 
−
** [http://www.uniprot.org/uniprot/P06530 P06530]
 
−
** [http://www.uniprot.org/uniprot/O41165 O41165]
 
−
** [http://www.uniprot.org/uniprot/Q98580 Q98580]
 
−
** [http://www.uniprot.org/uniprot/Q98567 Q98567]
 
−
** [http://www.uniprot.org/uniprot/Q59606 Q59606]
 
−
** [http://www.uniprot.org/uniprot/P0A462 P0A462]
 
−
** [http://www.uniprot.org/uniprot/P71101 P71101]
 
−
** [http://www.uniprot.org/uniprot/P50192 P50192]
 
−
** [http://www.uniprot.org/uniprot/P50185 P50185]
 
−
** [http://www.uniprot.org/uniprot/Q38652 Q38652]
 
−
** [http://www.uniprot.org/uniprot/P52311 P52311]
 
−
** [http://www.uniprot.org/uniprot/P31974 P31974]
 
−
** [http://www.uniprot.org/uniprot/P30774 P30774]
 
−
** [http://www.uniprot.org/uniprot/P23941 P23941]
 
−
** [http://www.uniprot.org/uniprot/P25262 P25262]
 
−
** [http://www.uniprot.org/uniprot/P25267 P25267]
 
−
** [http://www.uniprot.org/uniprot/P25263 P25263]
 
−
** [http://www.uniprot.org/uniprot/P15446 P15446]
 
−
** [http://www.uniprot.org/uniprot/P24600 P24600]
 
−
** [http://www.uniprot.org/uniprot/P23737 P23737]
 
−
** [http://www.uniprot.org/uniprot/P13906 P13906]
 
−
** [http://www.uniprot.org/uniprot/P14243 P14243]
 
−
** [http://www.uniprot.org/uniprot/P14244 P14244]
 
−
** [http://www.uniprot.org/uniprot/P14230 P14230]
 
−
** [http://www.uniprot.org/uniprot/P11409 P11409]
 
−
** [http://www.uniprot.org/uniprot/P10283 P10283]
 
−
** [http://www.uniprot.org/uniprot/P25265 P25265]
 
−
** [http://www.uniprot.org/uniprot/P0AED9 P0AED9]
 
−
** [http://www.uniprot.org/uniprot/P20589 P20589]
 
−
** [http://www.uniprot.org/uniprot/Q02778 Q02778]
 
−
** [http://www.uniprot.org/uniprot/P95820 P95820]
 
−
** [http://www.uniprot.org/uniprot/P70750 P70750]
 
−
** [http://www.uniprot.org/uniprot/P25264 P25264]
 
−
** [http://www.uniprot.org/uniprot/Q47257 Q47257]
 
−
** [http://www.uniprot.org/uniprot/O87740 O87740]
 
−
** [http://www.uniprot.org/uniprot/P43420 P43420]
 
−
** [http://www.uniprot.org/uniprot/Q9JWD8 Q9JWD8]
 
−
** [http://www.uniprot.org/uniprot/Q9JU80 Q9JU80]
 
−
** [http://www.uniprot.org/uniprot/P08455 P08455]
 
−
** [http://www.uniprot.org/uniprot/P11408 P11408]
 
−
** [http://www.uniprot.org/uniprot/P17044 P17044]
 
−
** [http://www.uniprot.org/uniprot/P19888 P19888]
 
−
** [http://www.uniprot.org/uniprot/P00476 P00476]
 
−
** [http://www.uniprot.org/uniprot/P09915 P09915]
 
−
** [http://www.uniprot.org/uniprot/P68586 P68586]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLZ0 Q9ZLZ0]
 
−
** [http://www.uniprot.org/uniprot/O24892 O24892]
 
−
** [http://www.uniprot.org/uniprot/P45000 P45000]
 
−
** [http://www.uniprot.org/uniprot/P29567 P29567]
 
−
** [http://www.uniprot.org/uniprot/P25282 P25282]
 
−
** [http://www.uniprot.org/uniprot/Q9JQR8 Q9JQR8]
 
−
** [http://www.uniprot.org/uniprot/O25746 O25746]
 
−
** [http://www.uniprot.org/uniprot/P36216 P36216]
 
−
** [http://www.uniprot.org/uniprot/P25283 P25283]
 
−
** [http://www.uniprot.org/uniprot/O23273 O23273]
 
−
** [http://www.uniprot.org/uniprot/Q92072 Q92072]
 
−
** [http://www.uniprot.org/uniprot/P79922 P79922]
 
−
** [http://www.uniprot.org/uniprot/O08431 O08431]
 
−
** [http://www.uniprot.org/uniprot/Q9Z330 Q9Z330]
 
−
** [http://www.uniprot.org/uniprot/P13864 P13864]
 
−
** [http://www.uniprot.org/uniprot/Q9S9I8 Q9S9I8]
 
−
** [http://www.uniprot.org/uniprot/P34881 P34881]
 
−
** [http://www.uniprot.org/uniprot/Q60171 Q60171]
 
−
** [http://www.uniprot.org/uniprot/O65343 O65343]
 
−
** [http://www.uniprot.org/uniprot/O49022 O49022]
 
−
** [http://www.uniprot.org/uniprot/Q9T0I1 Q9T0I1]
 
−
** [http://www.uniprot.org/uniprot/O49889 O49889]
 
−
** [http://www.uniprot.org/uniprot/O42731 O42731]
 
−
** [http://www.uniprot.org/uniprot/O48866 O48866]
 
−
** [http://www.uniprot.org/uniprot/O48867 O48867]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00380 R00380]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dna (cytosine-5-)-methyltransferase}}
+
{{#set: common-name=ribose-phosphate diphosphokinase}}
−
{{#set: ec-number=ec-2.1.1.37}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=8}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:21, 18 March 2021

Reaction R5PDP

  • direction:
    • left-to-right
  • common-name:
    • ribose-phosphate diphosphokinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=R5PDP&oldid=141674"