Difference between revisions of "R5PDP"

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(Created page with "Category:reaction == Reaction NAD+-ADP-RIBOSYLTRANSFERASE-RXN == * direction: ** reversible * common-name: ** nad+ adp-ribosyltransferase * ec-number: ** [http://enzyme.ex...")
(Created page with "Category:reaction == Reaction RXN-12461 == * direction: ** left-to-right * common-name: ** trna (carboxymethyluridine34-5-o)-methyltransferase * ec-number: ** [http://enzy...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction NAD+-ADP-RIBOSYLTRANSFERASE-RXN ==
+
== Reaction RXN-12461 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** nad+ adp-ribosyltransferase
+
** trna (carboxymethyluridine34-5-o)-methyltransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.30 ec-2.4.2.30]
+
** [http://enzyme.expasy.org/EC/2.1.1.229 ec-2.1.1.229]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADP-D-Ribosyl-Acceptors]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[ADP-D-Ribosyl-Acceptors]][c] '''+''' 1 [[NIACINAMIDE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[carbo-me-ur-34-tRNA]][c] '''=>''' 1 [[5-2-me-oxy-2-oxo-et-ur-34-tRNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ02625]]
−
* Gene: [[SJ12212]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ16612]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05422]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ15997]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00694]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15978]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15979]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21479]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10040]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13521]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19643]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7888]], tRNA-uridine 2-thiolation (cytoplasmic):
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6829]], tRNA methylation (yeast):
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* RHEA:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04176 R04176]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43209 43209]
−
* UNIPROT:
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/P09874 P09874]
+
{{#set: common-name=trna (carboxymethyluridine34-5-o)-methyltransferase}}
−
** [http://www.uniprot.org/uniprot/P35875 P35875]
+
{{#set: ec-number=ec-2.1.1.229}}
−
** [http://www.uniprot.org/uniprot/P26446 P26446]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P18493 P18493]
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/Q08824 Q08824]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P11103 P11103]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P14299 P14299]
 
−
** [http://www.uniprot.org/uniprot/P27008 P27008]
 
−
** [http://www.uniprot.org/uniprot/P31669 P31669]
 
−
** [http://www.uniprot.org/uniprot/Q11208 Q11208]
 
−
** [http://www.uniprot.org/uniprot/Q11207 Q11207]
 
−
** [http://www.uniprot.org/uniprot/O50017 O50017]
 
−
** [http://www.uniprot.org/uniprot/O24570 O24570]
 
−
** [http://www.uniprot.org/uniprot/Q9ZP54 Q9ZP54]
 
−
** [http://www.uniprot.org/uniprot/P04977 P04977]
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=nad+ adp-ribosyltransferase}}
 
−
{{#set: ec-number=ec-2.4.2.30}}
 
−
{{#set: nb gene associated=10}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:34, 5 January 2021

Reaction RXN-12461

  • direction:
    • left-to-right
  • common-name:
    • trna (carboxymethyluridine34-5-o)-methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7888, tRNA-uridine 2-thiolation (cytoplasmic):
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6829, tRNA methylation (yeast):
    • 11 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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