Difference between revisions of "RETINOL-DEHYDROGENASE-RXN"

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(Created page with "Category:reaction == Reaction CYSPH-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1] == Reaction formula == * 1 CYS[c]...")
(Created page with "Category:reaction == Reaction ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN == * direction: ** left-to-right * common-name: ** adenosylhomocysteine nucleosidase * ec-number: ** [h...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CYSPH-RXN ==
+
== Reaction ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** adenosylhomocysteine nucleosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1 ec-2.5.1]
+
** [http://enzyme.expasy.org/EC/3.2.2.9 ec-3.2.2.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYS]][c] '''+''' 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENINE]][c] '''+''' 1 [[CPD-564]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ02916]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14933]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07466]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-702]], L-methionine biosynthesis II (plants):
+
* [[PWY-6153]], autoinducer AI-2 biosynthesis I:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6154]], autoinducer AI-2 biosynthesis II (Vibrio):
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6151]], S-adenosyl-L-methionine salvage I:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR95625
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17806 17806]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00194 R00194]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9JV64 Q9JV64]
 +
** [http://www.uniprot.org/uniprot/Q9PJ10 Q9PJ10]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.5.1}}
+
{{#set: common-name=adenosylhomocysteine nucleosidase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-3.2.2.9}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:35, 15 March 2021

Reaction ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • adenosylhomocysteine nucleosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6153, autoinducer AI-2 biosynthesis I:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-6154, autoinducer AI-2 biosynthesis II (Vibrio):
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6151, S-adenosyl-L-methionine salvage I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-I9, L-cysteine biosynthesis VI (from L-methionine):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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