Difference between revisions of "RETINOL-DEHYDROGENASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOLACTSYN-RXN ACETOLACTSYN-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme....")
 
(Created page with "Category:reaction == Reaction RETINOL-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** all-trans-retinol dehydrogenase (nad) ** all-trans-retinol dehydrog...")
 
(9 intermediate revisions by 4 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACETOLACTSYN-RXN ACETOLACTSYN-RXN] ==
+
== Reaction RETINOL-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** all-trans-retinol dehydrogenase (nad)
 +
** all-trans-retinol dehydrogenase
 +
** retinol dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6]
+
** [http://enzyme.expasy.org/EC/1.1.1.105 ec-1.1.1.105]
 +
* synonymous:
 +
** all-trans retinol dehydrogenase
 +
** retinal reductase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 2 [[PYRUVATE]][c] '''=>''' 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ21312]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19151]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20291]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21601]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10028]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05274]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21322]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12574]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05276]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05277]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02723]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6389]], pyruvate fermentation to (S)-acetoin: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6389 PWY-6389]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5939]], pyruvate fermentation to (R)-acetoin II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5939 PWY-5939]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5938]], pyruvate fermentation to (R)-acetoin I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5938 PWY-5938]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[VALSYN-PWY]], L-valine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=VALSYN-PWY VALSYN-PWY]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7111 PWY-7111]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR103439
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20504 20504]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21287 21287]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25249 25249]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00226 R00226]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02124 R02124]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q59950 Q59950]
+
** [http://www.uniprot.org/uniprot/P50169 P50169]
−
** [http://www.uniprot.org/uniprot/P42463 P42463]
+
** [http://www.uniprot.org/uniprot/Q64437 Q64437]
−
** [http://www.uniprot.org/uniprot/Q8XAV3 Q8XAV3]
+
** [http://www.uniprot.org/uniprot/P40394 P40394]
−
** [http://www.uniprot.org/uniprot/P27868 P27868]
+
** [http://www.uniprot.org/uniprot/P50170 P50170]
−
** [http://www.uniprot.org/uniprot/P45260 P45260]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q57625 Q57625]
+
{{#set: common-name=all-trans-retinol dehydrogenase (nad)|retinol dehydrogenase|all-trans-retinol dehydrogenase}}
−
** [http://www.uniprot.org/uniprot/P37251 P37251]
+
{{#set: ec-number=ec-1.1.1.105}}
−
** [http://www.uniprot.org/uniprot/P45261 P45261]
+
{{#set: synonymous=all-trans retinol dehydrogenase|retinal reductase}}
−
** [http://www.uniprot.org/uniprot/O27493 O27493]
+
{{#set: nb gene associated=12}}
−
** [http://www.uniprot.org/uniprot/O66759 O66759]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q9PHU2 Q9PHU2]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/O05031 O05031]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
** [http://www.uniprot.org/uniprot/Q57725 Q57725]
+
{{#set: reconstruction comment=n.a}}
−
** [http://www.uniprot.org/uniprot/Q9PHU1 Q9PHU1]
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}
−
** [http://www.uniprot.org/uniprot/Q9JTI1 Q9JTI1]
 
−
** [http://www.uniprot.org/uniprot/Q58077 Q58077]
 
−
** [http://www.uniprot.org/uniprot/O28554 O28554]
 
−
** [http://www.uniprot.org/uniprot/O53554 O53554]
 
−
** [http://www.uniprot.org/uniprot/Q04789 Q04789]
 
−
** [http://www.uniprot.org/uniprot/Q9JRF4 Q9JRF4]
 
−
** [http://www.uniprot.org/uniprot/Q59272 Q59272]
 
−
** [http://www.uniprot.org/uniprot/P27696 P27696]
 
−
** [http://www.uniprot.org/uniprot/Q59498 Q59498]
 
−
** [http://www.uniprot.org/uniprot/Q9RFQ7 Q9RFQ7]
 
−
** [http://www.uniprot.org/uniprot/Q05767 Q05767]
 
−
** [http://www.uniprot.org/uniprot/P40811 P40811]
 
−
** [http://www.uniprot.org/uniprot/P21622 P21622]
 
−
** [http://www.uniprot.org/uniprot/P27818 P27818]
 
−
** [http://www.uniprot.org/uniprot/Q41768 Q41768]
 
−
** [http://www.uniprot.org/uniprot/Q41769 Q41769]
 
−
** [http://www.uniprot.org/uniprot/P69684 P69684]
 
−
** [http://www.uniprot.org/uniprot/P27819 P27819]
 
−
** [http://www.uniprot.org/uniprot/Q9R586 Q9R586]
 
−
** [http://www.uniprot.org/uniprot/Q02137 Q02137]
 
−
** [http://www.uniprot.org/uniprot/Q02140 Q02140]
 
−
** [http://www.uniprot.org/uniprot/P36620 P36620]
 
−
** [http://www.uniprot.org/uniprot/Q42767 Q42767]
 
−
** [http://www.uniprot.org/uniprot/Q42768 Q42768]
 
−
** [http://www.uniprot.org/uniprot/Q49865 Q49865]
 
−
** [http://www.uniprot.org/uniprot/O22547 O22547]
 
−
** [http://www.uniprot.org/uniprot/O49229 O49229]
 
−
** [http://www.uniprot.org/uniprot/O22578 O22578]
 
−
** [http://www.uniprot.org/uniprot/O49210 O49210]
 
−
** [http://www.uniprot.org/uniprot/Q60021 Q60021]
 
−
** [http://www.uniprot.org/uniprot/P07342 P07342]
 
−
** [http://www.uniprot.org/uniprot/P00892 P00892]
 
−
** [http://www.uniprot.org/uniprot/P08142 P08142]
 
−
** [http://www.uniprot.org/uniprot/P0ADF8 P0ADF8]
 
−
** [http://www.uniprot.org/uniprot/P00894 P00894]
 
−
** [http://www.uniprot.org/uniprot/P00893 P00893]
 
−
** [http://www.uniprot.org/uniprot/P17597 P17597]
 
−
** [http://www.uniprot.org/uniprot/P09342 P09342]
 
−
** [http://www.uniprot.org/uniprot/P09114 P09114]
 
−
** [http://www.uniprot.org/uniprot/P14874 P14874]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: ec-number=ec-2.2.1.6}}
 
−
{{#set: nb gene associated=0}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=gap-filling}}
 
−
{{#set: reconstruction tool=meneco}}
 
−
{{#set: reconstruction comment=added for gapfilling}}
 
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
 

Latest revision as of 11:20, 18 March 2021

Reaction RETINOL-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • all-trans-retinol dehydrogenase (nad)
    • all-trans-retinol dehydrogenase
    • retinol dehydrogenase
  • ec-number:
  • synonymous:
    • all-trans retinol dehydrogenase
    • retinal reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RETINOL-DEHYDROGENASE-RXN&oldid=141241"