Difference between revisions of "RETINOL-DEHYDROGENASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN == * direction: ** left-to-right * common-name: ** adenosylhomocysteine nucleosidase * ec-number: ** [h...")
(Created page with "Category:reaction == Reaction RETINOL-DEHYDROGENASE-RXN == * direction: ** reversible * common-name: ** all-trans-retinol dehydrogenase (nad) ** all-trans-retinol dehydrog...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN ==
+
== Reaction RETINOL-DEHYDROGENASE-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** adenosylhomocysteine nucleosidase
+
** all-trans-retinol dehydrogenase (nad)
 +
** all-trans-retinol dehydrogenase
 +
** retinol dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.2.9 ec-3.2.2.9]
+
** [http://enzyme.expasy.org/EC/1.1.1.105 ec-1.1.1.105]
 +
* synonymous:
 +
** all-trans retinol dehydrogenase
 +
** retinal reductase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENINE]][c] '''+''' 1 [[CPD-564]][c]
+
* 1 [[CPD-13524]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02916]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ21312]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19151]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14933]]
+
* Gene: [[SJ20291]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07466]]
+
* Gene: [[SJ21601]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10028]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05274]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21322]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12574]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05276]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05277]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ02723]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6153]], autoinducer AI-2 biosynthesis I:
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6154]], autoinducer AI-2 biosynthesis II (Vibrio):
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6151]], S-adenosyl-L-methionine salvage I:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine):
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR95625
+
* METANETX-RXN : MNXR103439
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17806 17806]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21287 21287]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00194 R00194]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02124 R02124]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JV64 Q9JV64]
+
** [http://www.uniprot.org/uniprot/P50169 P50169]
−
** [http://www.uniprot.org/uniprot/Q9PJ10 Q9PJ10]
+
** [http://www.uniprot.org/uniprot/Q64437 Q64437]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P40394 P40394]
−
{{#set: common-name=adenosylhomocysteine nucleosidase}}
+
** [http://www.uniprot.org/uniprot/P50170 P50170]
−
{{#set: ec-number=ec-3.2.2.9}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=3}}
+
{{#set: common-name=all-trans-retinol dehydrogenase (nad)|retinol dehydrogenase|all-trans-retinol dehydrogenase}}
−
{{#set: nb pathway associated=4}}
+
{{#set: ec-number=ec-1.1.1.105}}
 +
{{#set: synonymous=all-trans retinol dehydrogenase|retinal reductase}}
 +
{{#set: nb gene associated=12}}
 +
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RETINOL-DEHYDROGENASE-RXN

  • direction:
    • reversible
  • common-name:
    • all-trans-retinol dehydrogenase (nad)
    • all-trans-retinol dehydrogenase
    • retinol dehydrogenase
  • ec-number:
  • synonymous:
    • all-trans retinol dehydrogenase
    • retinal reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RETINOL-DEHYDROGENASE-RXN&oldid=141241"