Difference between revisions of "RIBOFLAVIN-SYN-RXN"

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(Created page with "Category:reaction == Reaction 3.1.3.46-RXN == * direction: ** left-to-right * common-name: ** fructose-2,6-bisphosphatase * ec-number: ** [http://enzyme.expasy.org/EC/3.1....")
(Created page with "Category:reaction == Reaction RIBOFLAVIN-SYN-RXN == * direction: ** left-to-right * common-name: ** riboflavin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1....")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.3.46-RXN ==
+
== Reaction RIBOFLAVIN-SYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** fructose-2,6-bisphosphatase
+
** riboflavin synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.46 ec-3.1.3.46]
+
** [http://enzyme.expasy.org/EC/2.5.1.9 ec-2.5.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-535]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
+
* 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ11166]]
−
* Gene: [[SJ16286]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09480]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21480]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12299]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03483]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04557]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09481]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12908]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11840]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-423]], fructose 2,6-bisphosphate biosynthesis:
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6167]], flavin biosynthesis II (archaea):
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR103430
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17290 17290]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00763 R00763]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P26285 P26285]
+
** [http://www.uniprot.org/uniprot/P11998 P11998]
−
** [http://www.uniprot.org/uniprot/P25114 P25114]
+
** [http://www.uniprot.org/uniprot/P16440 P16440]
−
** [http://www.uniprot.org/uniprot/Q7M3I3 Q7M3I3]
+
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
−
** [http://www.uniprot.org/uniprot/P49872 P49872]
+
** [http://www.uniprot.org/uniprot/O24854 O24854]
−
** [http://www.uniprot.org/uniprot/Q28830 Q28830]
+
** [http://www.uniprot.org/uniprot/O26237 O26237]
−
** [http://www.uniprot.org/uniprot/Q91348 Q91348]
+
** [http://www.uniprot.org/uniprot/P66037 P66037]
−
** [http://www.uniprot.org/uniprot/Q9JJH5 Q9JJH5]
+
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
−
** [http://www.uniprot.org/uniprot/Q16875 Q16875]
+
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
−
** [http://www.uniprot.org/uniprot/P07953 P07953]
+
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
−
** [http://www.uniprot.org/uniprot/P16118 P16118]
+
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
−
** [http://www.uniprot.org/uniprot/P32604 P32604]
+
** [http://www.uniprot.org/uniprot/P45273 P45273]
−
** [http://www.uniprot.org/uniprot/P70265 P70265]
+
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
−
** [http://www.uniprot.org/uniprot/P70266 P70266]
+
** [http://www.uniprot.org/uniprot/O66529 O66529]
−
** [http://www.uniprot.org/uniprot/O24559 O24559]
+
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
−
** [http://www.uniprot.org/uniprot/O81398 O81398]
+
** [http://www.uniprot.org/uniprot/O28856 O28856]
−
** [http://www.uniprot.org/uniprot/O64983 O64983]
+
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
−
** [http://www.uniprot.org/uniprot/Q9URZ7 Q9URZ7]
+
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=fructose-2,6-bisphosphatase}}
+
{{#set: common-name=riboflavin synthase}}
−
{{#set: ec-number=ec-3.1.3.46}}
+
{{#set: ec-number=ec-2.5.1.9}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • riboflavin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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