Difference between revisions of "RIBOFLAVIN-SYN-RXN"

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(Created page with "Category:reaction == Reaction RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78. == * direction: ** left-to-right == Reaction form...")
(Created page with "Category:reaction == Reaction RIBOFLAVIN-SYN-RXN == * direction: ** left-to-right * common-name: ** riboflavin synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1....")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13709-4-METHYL-824-CHOLESTADIENOL/NADPH/OXYGEN-MOLECULE/PROTON//CPD-4702/NADP/WATER.78. ==
+
== Reaction RIBOFLAVIN-SYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** riboflavin synthase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.5.1.9 ec-2.5.1.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[4-METHYL-824-CHOLESTADIENOL]][c] '''+''' 3.0 [[NADPH]][c] '''+''' 3.0 [[OXYGEN-MOLECULE]][c] '''+''' 2.0 [[PROTON]][c] '''=>''' 1.0 [[CPD-4702]][c] '''+''' 3.0 [[NADP]][c] '''+''' 4.0 [[WATER]][c]
+
* 2 [[DIMETHYL-D-RIBITYL-LUMAZINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[AMINO-RIBOSYLAMINO-1H-3H-PYR-DIONE]][c] '''+''' 1 [[RIBOFLAVIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ11166]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6167]], flavin biosynthesis II (archaea):
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6168]], flavin biosynthesis III (fungi):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR103430
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20773 20773]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00066 R00066]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P11998 P11998]
 +
** [http://www.uniprot.org/uniprot/P16440 P16440]
 +
** [http://www.uniprot.org/uniprot/Q9JUA6 Q9JUA6]
 +
** [http://www.uniprot.org/uniprot/O24854 O24854]
 +
** [http://www.uniprot.org/uniprot/O26237 O26237]
 +
** [http://www.uniprot.org/uniprot/P66037 P66037]
 +
** [http://www.uniprot.org/uniprot/Q9CGU8 Q9CGU8]
 +
** [http://www.uniprot.org/uniprot/Q9YDC5 Q9YDC5]
 +
** [http://www.uniprot.org/uniprot/Q9PN77 Q9PN77]
 +
** [http://www.uniprot.org/uniprot/Q9CGU6 Q9CGU6]
 +
** [http://www.uniprot.org/uniprot/P45273 P45273]
 +
** [http://www.uniprot.org/uniprot/Q9PIB9 Q9PIB9]
 +
** [http://www.uniprot.org/uniprot/O66529 O66529]
 +
** [http://www.uniprot.org/uniprot/Q58584 Q58584]
 +
** [http://www.uniprot.org/uniprot/O28856 O28856]
 +
** [http://www.uniprot.org/uniprot/Q01994 Q01994]
 +
** [http://www.uniprot.org/uniprot/P61714 P61714]
 +
** [http://www.uniprot.org/uniprot/P0AFU8 P0AFU8]
 +
** [http://www.uniprot.org/uniprot/P38145 P38145]
 +
** [http://www.uniprot.org/uniprot/Q55532 Q55532]
 +
** [http://www.uniprot.org/uniprot/P73527 P73527]
 +
** [http://www.uniprot.org/uniprot/Q44680 Q44680]
 +
** [http://www.uniprot.org/uniprot/Q44681 Q44681]
 +
** [http://www.uniprot.org/uniprot/P50854 P50854]
 +
** [http://www.uniprot.org/uniprot/P50856 P50856]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=riboflavin synthase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-2.5.1.9}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RIBOFLAVIN-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • riboflavin synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6167, flavin biosynthesis II (archaea):
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-6168, flavin biosynthesis III (fungi):
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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