Difference between revisions of "RIBOFLAVINSYNDEAM-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] == * direction: ** left-to-right * common-name: ** 6-phosphofructo...")
(Created page with "Category:reaction == Reaction RIBOFLAVINSYNDEAM-RXN == * direction: ** left-to-right * common-name: ** diaminohydroxyphosphoribosylaminopyrimidine deaminase * ec-number: *...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6PFRUCTPHOS-RXN 6PFRUCTPHOS-RXN] ==
+
== Reaction RIBOFLAVINSYNDEAM-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 6-phosphofructokinase
+
** diaminohydroxyphosphoribosylaminopyrimidine deaminase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.11 ec-2.7.1.11]
+
** [http://enzyme.expasy.org/EC/3.5.4.26 ec-3.5.4.26]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[FRUCTOSE-6P]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ22508]]
−
* Gene: [[SJ02434]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04582]]
+
* Gene: [[SJ17550]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16394]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-1861]], formaldehyde assimilation II (assimilatory RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants):
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR97435
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16110 16110]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21869 21869]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00756 R00756]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q7M3F7 Q7M3F7]
 
−
** [http://www.uniprot.org/uniprot/Q7M4J2 Q7M4J2]
 
−
** [http://www.uniprot.org/uniprot/P12382 P12382]
 
−
** [http://www.uniprot.org/uniprot/Q27665 Q27665]
 
−
** [http://www.uniprot.org/uniprot/P52034 P52034]
 
−
** [http://www.uniprot.org/uniprot/Q7M4K9 Q7M4K9]
 
−
** [http://www.uniprot.org/uniprot/P43863 P43863]
 
−
** [http://www.uniprot.org/uniprot/P20275 P20275]
 
−
** [http://www.uniprot.org/uniprot/P47457 P47457]
 
−
** [http://www.uniprot.org/uniprot/Q01813 Q01813]
 
−
** [http://www.uniprot.org/uniprot/Q07636 Q07636]
 
−
** [http://www.uniprot.org/uniprot/P16861 P16861]
 
−
** [http://www.uniprot.org/uniprot/P16862 P16862]
 
−
** [http://www.uniprot.org/uniprot/P00512 P00512]
 
−
** [http://www.uniprot.org/uniprot/P0A796 P0A796]
 
−
** [http://www.uniprot.org/uniprot/P06999 P06999]
 
−
** [http://www.uniprot.org/uniprot/P08237 P08237]
 
−
** [http://www.uniprot.org/uniprot/P00511 P00511]
 
−
** [http://www.uniprot.org/uniprot/P70927 P70927]
 
−
** [http://www.uniprot.org/uniprot/Q7M3F5 Q7M3F5]
 
−
** [http://www.uniprot.org/uniprot/Q9TWY0 Q9TWY0]
 
−
** [http://www.uniprot.org/uniprot/P30835 P30835]
 
−
** [http://www.uniprot.org/uniprot/Q03215 Q03215]
 
−
** [http://www.uniprot.org/uniprot/Q03216 Q03216]
 
−
** [http://www.uniprot.org/uniprot/P80019 P80019]
 
−
** [http://www.uniprot.org/uniprot/Q59214 Q59214]
 
−
** [http://www.uniprot.org/uniprot/Q27705 Q27705]
 
−
** [http://www.uniprot.org/uniprot/P75476 P75476]
 
−
** [http://www.uniprot.org/uniprot/P72830 P72830]
 
−
** [http://www.uniprot.org/uniprot/Q55988 Q55988]
 
−
** [http://www.uniprot.org/uniprot/Q49084 Q49084]
 
−
** [http://www.uniprot.org/uniprot/O08333 O08333]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=6-phosphofructokinase}}
+
{{#set: common-name=diaminohydroxyphosphoribosylaminopyrimidine deaminase}}
−
{{#set: ec-number=ec-2.7.1.11}}
+
{{#set: ec-number=ec-3.5.4.26}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=6}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction RIBOFLAVINSYNDEAM-RXN

  • direction:
    • left-to-right
  • common-name:
    • diaminohydroxyphosphoribosylaminopyrimidine deaminase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants):
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR97435
  • RHEA:
  • LIGAND-RXN:





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