Difference between revisions of "RIBOKIN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1133 RXN0-1133] == * direction: ** left-to-right * common-name: ** lipoate acetyltransferase *...")
(Created page with "Category:reaction == Reaction RIBOKIN-RXN == * direction: ** left-to-right * common-name: ** ribokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.15 ec-2.7.1.15]...")
 
(7 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1133 RXN0-1133] ==
+
== Reaction RIBOKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** lipoate acetyltransferase
+
** ribokinase
−
** pyruvate dehydrogenase (nad+)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.12 ec-2.3.1.12]
+
** [http://enzyme.expasy.org/EC/2.7.1.15 ec-2.7.1.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[Pyruvate-dehydrogenase-acetylDHlipoyl]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[Pyruvate-dehydrogenase-dihydrolipoate]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-15318]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ01736]]
−
* Gene: [[SJ00971]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ17268]]
+
* Gene: [[SJ07367]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10087]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* Gene: [[SJ08247]]
−
* Gene: [[SJ10725]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ01042]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ10792]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13527]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA: [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEHYD-PWY PYRUVDEHYD-PWY]
+
* [[RIBOKIN-PWY]], ribose phosphorylation:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR116251
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13698 13698]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02569 R02569]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q01991 Q01991]
+
** [http://www.uniprot.org/uniprot/P44331 P44331]
−
** [http://www.uniprot.org/uniprot/P12695 P12695]
+
** [http://www.uniprot.org/uniprot/P36945 P36945]
−
** [http://www.uniprot.org/uniprot/Q7M2M8 Q7M2M8]
+
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
−
** [http://www.uniprot.org/uniprot/P10515 P10515]
+
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
−
** [http://www.uniprot.org/uniprot/Q39082 Q39082]
+
** [http://www.uniprot.org/uniprot/P25332 P25332]
−
** [http://www.uniprot.org/uniprot/Q9TRP7 Q9TRP7]
+
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
−
** [http://www.uniprot.org/uniprot/Q7M0X6 Q7M0X6]
+
** [http://www.uniprot.org/uniprot/O93727 O93727]
−
** [http://www.uniprot.org/uniprot/Q59098 Q59098]
 
−
** [http://www.uniprot.org/uniprot/Q9PF09 Q9PF09]
 
−
** [http://www.uniprot.org/uniprot/P35489 P35489]
 
−
** [http://www.uniprot.org/uniprot/P21883 P21883]
 
−
** [http://www.uniprot.org/uniprot/Q59658 Q59658]
 
−
** [http://www.uniprot.org/uniprot/Q9JU07 Q9JU07]
 
−
** [http://www.uniprot.org/uniprot/Q59298 Q59298]
 
−
** [http://www.uniprot.org/uniprot/P45118 P45118]
 
−
** [http://www.uniprot.org/uniprot/Q54102 Q54102]
 
−
** [http://www.uniprot.org/uniprot/P11961 P11961]
 
−
** [http://www.uniprot.org/uniprot/Q59821 Q59821]
 
−
** [http://www.uniprot.org/uniprot/P08461 P08461]
 
−
** [http://www.uniprot.org/uniprot/Q16791 Q16791]
 
−
** [http://www.uniprot.org/uniprot/Q41737 Q41737]
 
−
** [http://www.uniprot.org/uniprot/O64968 O64968]
 
−
** [http://www.uniprot.org/uniprot/P10802 P10802]
 
−
** [http://www.uniprot.org/uniprot/P06959 P06959]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyruvate dehydrogenase (nad+)|lipoate acetyltransferase}}
+
{{#set: common-name=ribokinase}}
−
{{#set: ec-number=ec-2.3.1.12}}
+
{{#set: ec-number=ec-2.7.1.15}}
−
{{#set: nb gene associated=7}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RIBOKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • ribokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • RIBOKIN-PWY, ribose phosphorylation:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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