Difference between revisions of "RIBOKIN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708] == * direction: ** left-to-right * common-name: ** acyl-coa hydrolase * ec-num...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1133 RXN0-1133] == * direction: ** left-to-right * common-name: ** lipoate acetyltransferase *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10708 RXN-10708] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1133 RXN0-1133] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa hydrolase
+
** lipoate acetyltransferase
 +
** pyruvate dehydrogenase (nad+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.2.20 ec-3.1.2.20]
+
** [http://enzyme.expasy.org/EC/2.3.1.12 ec-2.3.1.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-11529]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[CPD-731]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[Pyruvate-dehydrogenase-acetylDHlipoyl]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[Pyruvate-dehydrogenase-dihydrolipoate]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09637]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ00971]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ09703]]
+
* Gene: [[SJ17268]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18316]]
+
* Gene: [[SJ10087]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10725]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ01042]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ10792]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13527]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
+
* [[PYRUVDEHYD-PWY]], pyruvate decarboxylation to acetyl CoA: [http://metacyc.org/META/NEW-IMAGE?object=PYRUVDEHYD-PWY PYRUVDEHYD-PWY]
−
** '''16''' reactions found over '''19''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02569 R02569]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q01991 Q01991]
 +
** [http://www.uniprot.org/uniprot/P12695 P12695]
 +
** [http://www.uniprot.org/uniprot/Q7M2M8 Q7M2M8]
 +
** [http://www.uniprot.org/uniprot/P10515 P10515]
 +
** [http://www.uniprot.org/uniprot/Q39082 Q39082]
 +
** [http://www.uniprot.org/uniprot/Q9TRP7 Q9TRP7]
 +
** [http://www.uniprot.org/uniprot/Q7M0X6 Q7M0X6]
 +
** [http://www.uniprot.org/uniprot/Q59098 Q59098]
 +
** [http://www.uniprot.org/uniprot/Q9PF09 Q9PF09]
 +
** [http://www.uniprot.org/uniprot/P35489 P35489]
 +
** [http://www.uniprot.org/uniprot/P21883 P21883]
 +
** [http://www.uniprot.org/uniprot/Q59658 Q59658]
 +
** [http://www.uniprot.org/uniprot/Q9JU07 Q9JU07]
 +
** [http://www.uniprot.org/uniprot/Q59298 Q59298]
 +
** [http://www.uniprot.org/uniprot/P45118 P45118]
 +
** [http://www.uniprot.org/uniprot/Q54102 Q54102]
 +
** [http://www.uniprot.org/uniprot/P11961 P11961]
 +
** [http://www.uniprot.org/uniprot/Q59821 Q59821]
 +
** [http://www.uniprot.org/uniprot/P08461 P08461]
 +
** [http://www.uniprot.org/uniprot/Q16791 Q16791]
 +
** [http://www.uniprot.org/uniprot/Q41737 Q41737]
 +
** [http://www.uniprot.org/uniprot/O64968 O64968]
 +
** [http://www.uniprot.org/uniprot/P10802 P10802]
 +
** [http://www.uniprot.org/uniprot/P06959 P06959]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa hydrolase}}
+
{{#set: common-name=pyruvate dehydrogenase (nad+)|lipoate acetyltransferase}}
−
{{#set: ec-number=ec-3.1.2.20}}
+
{{#set: ec-number=ec-2.3.1.12}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=7}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction RXN0-1133

  • direction:
    • left-to-right
  • common-name:
    • lipoate acetyltransferase
    • pyruvate dehydrogenase (nad+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RIBOKIN-RXN&oldid=36875"