Difference between revisions of "RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN"

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(Created page with "Category:reaction == Reaction AKGDHmi == * direction: ** left-to-right * common-name: ** 2-oxoglutarate dehydrogenase e1 component == Reaction formula == * 1.0 2-KETOGLU...")
(Created page with "Category:reaction == Reaction DIHYDROOROT-RXN == * direction: ** reversible * common-name: ** dihydroorotase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction AKGDHmi ==
+
== Reaction DIHYDROOROT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 2-oxoglutarate dehydrogenase e1 component
+
** dihydroorotase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.5.2.3 ec-3.5.2.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[2-KETOGLUTARATE]][m] '''+''' 1.0 [[LIPOAMIDE]][m] '''+''' 1.0 [[PROTON]][m] '''=>''' 1.0 [[CARBON-DIOXIDE]][m] '''+''' 1.0 [[CPD0-341]][m]
+
* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21701]]
+
* Gene: [[SJ15949]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17851]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ19150]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5686]], UMP biosynthesis I:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=2-oxoglutarate dehydrogenase e1 component}}
+
* RHEA:
−
{{#set: nb gene associated=1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24299 24299]
−
{{#set: nb pathway associated=0}}
+
* LIGAND-RXN:
−
{{#set: reconstruction category=orthology}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01993 R01993]
−
{{#set: reconstruction tool=pantograph}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P08955 P08955]
 +
** [http://www.uniprot.org/uniprot/P27708 P27708]
 +
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 +
** [http://www.uniprot.org/uniprot/Q58885 Q58885]
 +
** [http://www.uniprot.org/uniprot/Q9PIN6 Q9PIN6]
 +
** [http://www.uniprot.org/uniprot/P25995 P25995]
 +
** [http://www.uniprot.org/uniprot/P20051 P20051]
 +
** [http://www.uniprot.org/uniprot/P06204 P06204]
 +
** [http://www.uniprot.org/uniprot/P05020 P05020]
 +
** [http://www.uniprot.org/uniprot/P31301 P31301]
 +
** [http://www.uniprot.org/uniprot/Q9PNA0 Q9PNA0]
 +
** [http://www.uniprot.org/uniprot/Q9JVD6 Q9JVD6]
 +
** [http://www.uniprot.org/uniprot/P46538 P46538]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/P72934 P72934]
 +
** [http://www.uniprot.org/uniprot/P74438 P74438]
 +
** [http://www.uniprot.org/uniprot/O04904 O04904]
 +
** [http://www.uniprot.org/uniprot/P72170 P72170]
 +
** [http://www.uniprot.org/uniprot/O76138 O76138]
 +
** [http://www.uniprot.org/uniprot/O27199 O27199]
 +
** [http://www.uniprot.org/uniprot/P48795 P48795]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=dihydroorotase}}
 +
{{#set: ec-number=ec-3.5.2.3}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 19:06, 14 January 2021

Reaction DIHYDROOROT-RXN

  • direction:
    • reversible
  • common-name:
    • dihydroorotase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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