Difference between revisions of "RIBULOSE-BISPHOSPHATE-CARBOXYLASE-RXN"

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(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] *...")
(Created page with "Category:reaction == Reaction TCX8 == * direction: ** reversible * common-name: ** peroxisomal abc transporter 1 == Reaction formula == * 1.0 ATP[C_c] '''<=>''' 1.0 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 6PGLUCONDEHYDROG-RXN ==
+
== Reaction TCX8 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
+
** peroxisomal abc transporter 1
−
** phosphogluconate dehydrogenase (decarboxylating)
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
 
−
* synonymous:
 
−
** phosphogluconic acid dehydrogenase
 
−
** 6-phosphogluconic carboxylase
 
−
** 6-phosphogluconic dehydrogenase
 
−
** 6pgd
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
+
* 1.0 [[ATP]][C_c] '''<=>''' 1.0 [[ATP]][C_x]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14054]]
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15062]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11815]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14331]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11912]]
+
* Gene: [[SJ17871]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12698]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22264]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12699]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00878]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation:
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* UNIPROT:
+
{{#set: common-name=peroxisomal abc transporter 1}}
−
** [http://www.uniprot.org/uniprot/P14332 P14332]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P31072 P31072]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P47506 P47506]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 
−
** [http://www.uniprot.org/uniprot/P43774 P43774]
 
−
** [http://www.uniprot.org/uniprot/P12013 P12013]
 
−
** [http://www.uniprot.org/uniprot/P41576 P41576]
 
−
** [http://www.uniprot.org/uniprot/P00350 P00350]
 
−
** [http://www.uniprot.org/uniprot/P00349 P00349]
 
−
** [http://www.uniprot.org/uniprot/P52209 P52209]
 
−
** [http://www.uniprot.org/uniprot/P41581 P41581]
 
−
** [http://www.uniprot.org/uniprot/P41582 P41582]
 
−
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 
−
** [http://www.uniprot.org/uniprot/P41583 P41583]
 
−
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 
−
** [http://www.uniprot.org/uniprot/P37754 P37754]
 
−
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 
−
** [http://www.uniprot.org/uniprot/P52207 P52207]
 
−
** [http://www.uniprot.org/uniprot/P70718 P70718]
 
−
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 
−
** [http://www.uniprot.org/uniprot/P41572 P41572]
 
−
** [http://www.uniprot.org/uniprot/P14062 P14062]
 
−
** [http://www.uniprot.org/uniprot/P21577 P21577]
 
−
** [http://www.uniprot.org/uniprot/P38720 P38720]
 
−
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 
−
** [http://www.uniprot.org/uniprot/P53319 P53319]
 
−
** [http://www.uniprot.org/uniprot/O81237 O81237]
 
−
** [http://www.uniprot.org/uniprot/O81238 O81238]
 
−
** [http://www.uniprot.org/uniprot/O81239 O81239]
 
−
** [http://www.uniprot.org/uniprot/O22111 O22111]
 
−
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 
−
** [http://www.uniprot.org/uniprot/O32911 O32911]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]|phosphogluconate dehydrogenase (decarboxylating)}}
 
−
{{#set: ec-number=ec-1.1.1.351}}
 
−
{{#set: synonymous=6-phosphogluconic dehydrogenase|6-phosphogluconic carboxylase|phosphogluconic acid dehydrogenase|6pgd}}
 
−
{{#set: nb gene associated=11}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:37, 5 January 2021

Reaction TCX8

  • direction:
    • reversible
  • common-name:
    • peroxisomal abc transporter 1

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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