Difference between revisions of "RNA-DIRECTED-RNA-POLYMERASE-RXN"

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(Created page with "Category:reaction == Reaction 3.4.24.64-RXN == * direction: ** left-to-right * common-name: ** mitochondrial-processing peptidase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction RXN-13001 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.134 ec-4.2.1.134] == Reaction formula == * 1 ...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.24.64-RXN ==
+
== Reaction RXN-13001 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** mitochondrial-processing peptidase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.24.64 ec-3.4.24.64]
+
** [http://enzyme.expasy.org/EC/4.2.1.134 ec-4.2.1.134]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Mitochondrial-Preproteins]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MPP-processed-mitochonrial-proteins]][c] '''+''' 1 [[Peptides-holder]][c]
+
* 1 [[CPD-14419]][c] '''=>''' 1 [[CPD-14420]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13715]]
+
* Gene: [[SJ00783]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ06882]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09586]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08789]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13651]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7724]], icosapentaenoate biosynthesis III (8-desaturase, mammals):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7619]], juniperonate biosynthesis:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7602]], icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11913 P11913]
 
−
** [http://www.uniprot.org/uniprot/P20069 P20069]
 
−
** [http://www.uniprot.org/uniprot/P23955 P23955]
 
−
** [http://www.uniprot.org/uniprot/Q9T2S9 Q9T2S9]
 
−
** [http://www.uniprot.org/uniprot/Q9T2S8 Q9T2S8]
 
−
** [http://www.uniprot.org/uniprot/P10507 P10507]
 
−
** [http://www.uniprot.org/uniprot/P29677 P29677]
 
−
** [http://www.uniprot.org/uniprot/Q03346 Q03346]
 
−
** [http://www.uniprot.org/uniprot/Q41440 Q41440]
 
−
** [http://www.uniprot.org/uniprot/Q9UG64 Q9UG64]
 
−
** [http://www.uniprot.org/uniprot/Q9P7X1 Q9P7X1]
 
−
** [http://www.uniprot.org/uniprot/P11914 P11914]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=mitochondrial-processing peptidase}}
+
{{#set: ec-number=ec-4.2.1.134}}
−
{{#set: ec-number=ec-3.4.24.64}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=3}}
−
{{#set: nb pathway associated=0}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:20, 14 January 2021

Reaction RXN-13001

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7724, icosapentaenoate biosynthesis III (8-desaturase, mammals):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7619, juniperonate biosynthesis:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7602, icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes):
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RNA-DIRECTED-RNA-POLYMERASE-RXN&oldid=91014"