Difference between revisions of "RNA-LIGASE-ATP-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGUANPHOSPHOR-RXN DEOXYGUANPHOSPHOR-RXN] == * direction: ** reversible * common-name: ** deoxyg...")
(Created page with "Category:reaction == Reaction RNA-LIGASE-ATP-RXN == * direction: ** left-to-right * common-name: ** rna ligase (atp) * ec-number: ** [http://enzyme.expasy.org/EC/6.5.1.3 e...")
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGUANPHOSPHOR-RXN DEOXYGUANPHOSPHOR-RXN] ==
+
== Reaction RNA-LIGASE-ATP-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** deoxyguanosine phosphorylase
+
** rna ligase (atp)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
+
** [http://enzyme.expasy.org/EC/6.5.1.3 ec-6.5.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DEOXYGUANOSINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DEOXY-D-RIBOSE-1-PHOSPHATE]][c] '''+''' 1 [[GUANINE]][c]
+
* 1 [[3Prime-OH-Terminated-RNAs]][c] '''+''' 1 [[5-Phospho-RNA]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[RNA-Holder]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03195]]
+
* Gene: [[SJ14703]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03634]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7179-1]], purine deoxyribonucleosides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7179-1 PWY-7179-1]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7179]], purine deoxyribonucleosides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7179 PWY-7179]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR116261
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27741 27741]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01969 R01969]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07640 R07640]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=deoxyguanosine phosphorylase}}
+
** [http://www.uniprot.org/uniprot/P00971 P00971]
−
{{#set: ec-number=ec-2.4.2.1}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=rna ligase (atp)}}
−
{{#set: nb pathway associated=2}}
+
{{#set: ec-number=ec-6.5.1.3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RNA-LIGASE-ATP-RXN

  • direction:
    • left-to-right
  • common-name:
    • rna ligase (atp)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR116261
  • LIGAND-RXN:
  • UNIPROT:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RNA-LIGASE-ATP-RXN&oldid=140943"