Difference between revisions of "RX"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12479 RXN-12479] == * direction: ** left-to-right * common-name: ** adenosine4 in trnahis 2'-o-...")
(Created page with "Category:gene == Gene SJ08650 == * transcription-direction: ** positive * right-end-position: ** 15111 * left-end-position: ** 6854 * centisome-position: ** 13.472235...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12479 RXN-12479] ==
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== Gene SJ08650 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* common-name:
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* right-end-position:
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** adenosine4 in trnahis 2'-o-methyltransferase
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** 15111
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/2.1.1.225 ec-2.1.1.225]
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** 6854
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== Reaction formula ==
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* centisome-position:
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* 1 [[His-tRNA-Adenosine4]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[His-tRNA-2-O-MeAdenosine4]][c] '''+''' 1 [[PROTON]][c]
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** 13.472235   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ07716]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.7.10.1-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[2.7.12.1-RXN]]
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* [[PWY-6829]], tRNA methylation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6829 PWY-6829]
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** Category: [[annotation]]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[2.7.12.2-RXN]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[ATPASE-RXN]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43197 43197]
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** Category: [[annotation]]
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{{#set: direction=left-to-right}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=adenosine4 in trnahis 2'-o-methyltransferase}}
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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{{#set: ec-number=ec-2.1.1.225}}
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** Category: [[annotation]]
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{{#set: nb gene associated=1}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb pathway associated=1}}
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* [[PROTEIN-KINASE-RXN]]
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{{#set: reconstruction category=annotation}}
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** Category: [[annotation]]
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{{#set: reconstruction tool=pathwaytools}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction comment=n.a}}
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* [[RXN-12195]]
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{{#set: reconstruction source=saccharina_japonica_genome}}
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12196]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14906]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5462]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=15111}}
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{{#set: left-end-position=6854}}
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{{#set: centisome-position=13.472235    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=10}}
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{{#set: nb pathway associated=4}}

Revision as of 09:28, 27 August 2019

Gene SJ08650

  • transcription-direction:
    • positive
  • right-end-position:
    • 15111
  • left-end-position:
    • 6854
  • centisome-position:
    • 13.472235

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RX&oldid=34389"