Difference between revisions of "RXN-10"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.3-RXN 5.99.1.3-RXN] == * direction: ** reversible * common-name: ** dna topoisomerase type i...")
(Created page with "Category:reaction == Reaction RXN-9538 == * direction: ** left-to-right * common-name: ** trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific) ** fa...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.3-RXN 5.99.1.3-RXN] ==
+
== Reaction RXN-9538 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** dna topoisomerase type ii (atp-hydrolyzing)
+
** trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific)
−
** gyrase
+
** fatty acid synthase
 +
** myristoyl-[acp] reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.99.1.3 ec-5.99.1.3]
+
** [http://enzyme.expasy.org/EC/1.3.1.10 ec-1.3.1.10]
 +
** [http://enzyme.expasy.org/EC/1.3.1.39 ec-1.3.1.39]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
* synonymous:
 +
** trans tetradec-2-enoyl-[acp] reductase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Double-Stranded-DNAs]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Negatively-super-coiled-DNAs]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Tetradec-2-enoyl-ACPs]][c] '''=>''' 1 [[Myristoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ18170]]
+
* Gene: [[SJ10624]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ04866]]
+
* Gene: [[SJ04443]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19269]]
+
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ19629]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ13014]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15546]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03763]]
+
* Gene: [[SJ00613]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ06944]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01869]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16049]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04867]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04660]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18171]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07018]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18404]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18398]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19844]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07017]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20812]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07016]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03015]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06656]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06665]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14012]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18399]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13260]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03059]]
+
* Gene: [[SJ11672]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03883]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02796]]
+
* Gene: [[SJ15983]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17437]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07081]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08240]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* UNIPROT:
+
{{#set: common-name=trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific)|myristoyl-[acp] reductase|fatty acid synthase}}
−
** [http://www.uniprot.org/uniprot/Q7M3G2 Q7M3G2]
+
{{#set: ec-number=ec-2.3.1.85|ec-1.3.1.39|ec-1.3.1.10|ec-2.3.1.86}}
−
** [http://www.uniprot.org/uniprot/Q02880 Q02880]
+
{{#set: synonymous=trans tetradec-2-enoyl-[acp] reductase}}
−
** [http://www.uniprot.org/uniprot/P0A0K8 P0A0K8]
+
{{#set: nb gene associated=15}}
−
** [http://www.uniprot.org/uniprot/P41515 P41515]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P12531 P12531]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P27570 P27570]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q03470 Q03470]
 
−
** [http://www.uniprot.org/uniprot/P35810 P35810]
 
−
** [http://www.uniprot.org/uniprot/P43701 P43701]
 
−
** [http://www.uniprot.org/uniprot/Q9JX55 Q9JX55]
 
−
** [http://www.uniprot.org/uniprot/Q9CH36 Q9CH36]
 
−
** [http://www.uniprot.org/uniprot/P20831 P20831]
 
−
** [http://www.uniprot.org/uniprot/Q9JTW5 Q9JTW5]
 
−
** [http://www.uniprot.org/uniprot/P33769 P33769]
 
−
** [http://www.uniprot.org/uniprot/P47250 P47250]
 
−
** [http://www.uniprot.org/uniprot/Q59189 Q59189]
 
−
** [http://www.uniprot.org/uniprot/P05652 P05652]
 
−
** [http://www.uniprot.org/uniprot/P43700 P43700]
 
−
** [http://www.uniprot.org/uniprot/P05653 P05653]
 
−
** [http://www.uniprot.org/uniprot/O87667 O87667]
 
−
** [http://www.uniprot.org/uniprot/Q9CGI5 Q9CGI5]
 
−
** [http://www.uniprot.org/uniprot/P23992 P23992]
 
−
** [http://www.uniprot.org/uniprot/P09176 P09176]
 
−
** [http://www.uniprot.org/uniprot/P06786 P06786]
 
−
** [http://www.uniprot.org/uniprot/P0AES6 P0AES6]
 
−
** [http://www.uniprot.org/uniprot/Q00942 Q00942]
 
−
** [http://www.uniprot.org/uniprot/P22447 P22447]
 
−
** [http://www.uniprot.org/uniprot/P08096 P08096]
 
−
** [http://www.uniprot.org/uniprot/P07065 P07065]
 
−
** [http://www.uniprot.org/uniprot/P0AES4 P0AES4]
 
−
** [http://www.uniprot.org/uniprot/P14829 P14829]
 
−
** [http://www.uniprot.org/uniprot/P77993 P77993]
 
−
** [http://www.uniprot.org/uniprot/P22840 P22840]
 
−
** [http://www.uniprot.org/uniprot/Q01320 Q01320]
 
−
** [http://www.uniprot.org/uniprot/P15348 P15348]
 
−
** [http://www.uniprot.org/uniprot/P13364 P13364]
 
−
** [http://www.uniprot.org/uniprot/P34203 P34203]
 
−
** [http://www.uniprot.org/uniprot/P50074 P50074]
 
−
** [http://www.uniprot.org/uniprot/P34031 P34031]
 
−
** [http://www.uniprot.org/uniprot/Q50404 Q50404]
 
−
** [http://www.uniprot.org/uniprot/Q50405 Q50405]
 
−
** [http://www.uniprot.org/uniprot/Q50406 Q50406]
 
−
** [http://www.uniprot.org/uniprot/P41513 P41513]
 
−
** [http://www.uniprot.org/uniprot/Q43906 Q43906]
 
−
** [http://www.uniprot.org/uniprot/P30182 P30182]
 
−
** [http://www.uniprot.org/uniprot/P37411 P37411]
 
−
** [http://www.uniprot.org/uniprot/P0A0L0 P0A0L0]
 
−
** [http://www.uniprot.org/uniprot/Q50435 Q50435]
 
−
** [http://www.uniprot.org/uniprot/P22446 P22446]
 
−
** [http://www.uniprot.org/uniprot/P77966 P77966]
 
−
** [http://www.uniprot.org/uniprot/Q48974 Q48974]
 
−
** [http://www.uniprot.org/uniprot/Q48995 Q48995]
 
−
** [http://www.uniprot.org/uniprot/Q49017 Q49017]
 
−
** [http://www.uniprot.org/uniprot/O68071 O68071]
 
−
** [http://www.uniprot.org/uniprot/O68140 O68140]
 
−
** [http://www.uniprot.org/uniprot/O24308 O24308]
 
−
** [http://www.uniprot.org/uniprot/Q57532 Q57532]
 
−
** [http://www.uniprot.org/uniprot/O41065 O41065]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNN5 Q9ZNN5]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNN4 Q9ZNN4]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNN3 Q9ZNN3]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNN2 Q9ZNN2]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNN1 Q9ZNN1]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNN0 Q9ZNN0]
 
−
** [http://www.uniprot.org/uniprot/O87117 O87117]
 
−
** [http://www.uniprot.org/uniprot/Q9WXF4 Q9WXF4]
 
−
** [http://www.uniprot.org/uniprot/O50627 O50627]
 
−
** [http://www.uniprot.org/uniprot/O50628 O50628]
 
−
** [http://www.uniprot.org/uniprot/P94604 P94604]
 
−
** [http://www.uniprot.org/uniprot/P94605 P94605]
 
−
** [http://www.uniprot.org/uniprot/Q9S5H9 Q9S5H9]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNH3 Q9ZNH3]
 
−
** [http://www.uniprot.org/uniprot/Q9ZNH2 Q9ZNH2]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=gyrase|dna topoisomerase type ii (atp-hydrolyzing)}}
 
−
{{#set: ec-number=ec-5.99.1.3}}
 
−
{{#set: nb gene associated=28}}
 
−
{{#set: nb pathway associated=0}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 20:42, 18 December 2020

Reaction RXN-9538

  • direction:
    • left-to-right
  • common-name:
    • trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific)
    • fatty acid synthase
    • myristoyl-[acp] reductase
  • ec-number:
  • synonymous:
    • trans tetradec-2-enoyl-[acp] reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5994, palmitate biosynthesis (animals and fungi, cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "trans tetradec-2-enoyl-[acyl-carrier-protein] reductase (nadph, b-specific)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "myristoyl-[acp] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Property "Synonymous" (as page type) with input value "trans tetradec-2-enoyl-[acp] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-10&oldid=50396"