Difference between revisions of "RXN-10036"

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(Created page with "Category:reaction == Reaction 1.14.13.8-RXN == * direction: ** left-to-right * common-name: ** dimethylaniline monooxygenase ** n,n-dimethylaniline monooxygenase * ec-numb...")
(Created page with "Category:reaction == Reaction CYSTEINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** cysteine-trna ligase * ec-number: ** [http://enzyme.expasy.org/E...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.14.13.8-RXN ==
+
== Reaction CYSTEINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dimethylaniline monooxygenase
+
** cysteine-trna ligase
−
** n,n-dimethylaniline monooxygenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.13.8 ec-1.14.13.8]
+
** [http://enzyme.expasy.org/EC/6.1.1.16 ec-6.1.1.16]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADPH]][c] '''+''' 1 [[NN-DIMETHYLANILINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[NN-DIMETHYLANILINE-N-OXIDE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19796]]
−
* Gene: [[SJ00867]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13227]]
+
* Gene: [[SJ09098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ12227]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ16259]]
+
* Gene: [[SJ21439]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01518]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12236]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging:
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24469 24469]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17774 17774]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03344 R03344]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16549 P16549]
+
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
−
** [http://www.uniprot.org/uniprot/P17636 P17636]
+
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
−
** [http://www.uniprot.org/uniprot/Q01740 Q01740]
+
** [http://www.uniprot.org/uniprot/P43816 P43816]
−
** [http://www.uniprot.org/uniprot/Q04799 Q04799]
+
** [http://www.uniprot.org/uniprot/O29836 O29836]
−
** [http://www.uniprot.org/uniprot/Q7M061 Q7M061]
+
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
−
** [http://www.uniprot.org/uniprot/P17635 P17635]
+
** [http://www.uniprot.org/uniprot/O58370 O58370]
−
** [http://www.uniprot.org/uniprot/P49328 P49328]
+
** [http://www.uniprot.org/uniprot/O83129 O83129]
−
** [http://www.uniprot.org/uniprot/P32417 P32417]
+
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
−
** [http://www.uniprot.org/uniprot/P31512 P31512]
+
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
−
** [http://www.uniprot.org/uniprot/Q7M2Q0 Q7M2Q0]
+
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
−
** [http://www.uniprot.org/uniprot/P31513 P31513]
+
** [http://www.uniprot.org/uniprot/P41259 P41259]
−
** [http://www.uniprot.org/uniprot/P49109 P49109]
+
** [http://www.uniprot.org/uniprot/O51545 O51545]
−
** [http://www.uniprot.org/uniprot/P49326 P49326]
+
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 +
** [http://www.uniprot.org/uniprot/O67163 O67163]
 +
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 +
** [http://www.uniprot.org/uniprot/P47495 P47495]
 +
** [http://www.uniprot.org/uniprot/P75423 P75423]
 +
** [http://www.uniprot.org/uniprot/P74330 P74330]
 +
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 +
** [http://www.uniprot.org/uniprot/P21888 P21888]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dimethylaniline monooxygenase|n,n-dimethylaniline monooxygenase}}
+
{{#set: common-name=cysteine-trna ligase}}
−
{{#set: ec-number=ec-1.14.13.8}}
+
{{#set: ec-number=ec-6.1.1.16}}
−
{{#set: nb gene associated=5}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:04, 14 January 2021

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • cysteine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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