Difference between revisions of "RXN-10059"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8026 RXN-8026] == * direction: ** left-to-right * synonymous: ** crtz == Reaction formula == *...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** left-to-right * common-name: ** carbamoyl phosphate s...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8026 RXN-8026] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* synonymous:
+
* common-name:
−
** crtz
+
** carbamoyl phosphate synthetase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7409]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD1F-130]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
+
* 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07227]]
+
* Gene: [[SJ17851]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07228]]
+
** Category: [[orthology]]
−
** Category: [[manual]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[sjap]], Tool: [[unknown-tool]], Assignment: n.a, Comment: transformation of diatoxanthin into diadinoxanthin (second cycle of xanthophylls)
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15949]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7638]], echinenone and zeaxanthin biosynthesis (Synechocystis): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7638 PWY-7638]
+
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5944]], zeaxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5944 PWY-5944]
+
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5288]], astaxanthin biosynthesis (bacteria, fungi, algae): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5288 PWY-5288]
+
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[sjap]]; tool: [[unknown-tool]]; comment: transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07559 R07559]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30330 30330]
+
** [http://www.uniprot.org/uniprot/P08955 P08955]
 +
** [http://www.uniprot.org/uniprot/P13258 P13258]
 +
** [http://www.uniprot.org/uniprot/P38099 P38099]
 +
** [http://www.uniprot.org/uniprot/P27708 P27708]
 +
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
 +
** [http://www.uniprot.org/uniprot/O28994 O28994]
 +
** [http://www.uniprot.org/uniprot/P57689 P57689]
 +
** [http://www.uniprot.org/uniprot/P38098 P38098]
 +
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
 +
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
 +
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
 +
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
 +
** [http://www.uniprot.org/uniprot/P25993 P25993]
 +
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
 +
** [http://www.uniprot.org/uniprot/P25994 P25994]
 +
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
 +
** [http://www.uniprot.org/uniprot/O25577 O25577]
 +
** [http://www.uniprot.org/uniprot/P52557 P52557]
 +
** [http://www.uniprot.org/uniprot/P46537 P46537]
 +
** [http://www.uniprot.org/uniprot/P18185 P18185]
 +
** [http://www.uniprot.org/uniprot/P07259 P07259]
 +
** [http://www.uniprot.org/uniprot/P20054 P20054]
 +
** [http://www.uniprot.org/uniprot/P05990 P05990]
 +
** [http://www.uniprot.org/uniprot/P14845 P14845]
 +
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 +
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
 +
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 +
** [http://www.uniprot.org/uniprot/P03965 P03965]
 +
** [http://www.uniprot.org/uniprot/P07258 P07258]
 +
** [http://www.uniprot.org/uniprot/P00968 P00968]
 +
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
 +
** [http://www.uniprot.org/uniprot/P93345 P93345]
 +
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
 +
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
 +
** [http://www.uniprot.org/uniprot/O50236 O50236]
 +
** [http://www.uniprot.org/uniprot/O94313 O94313]
 +
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
 +
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
 +
** [http://www.uniprot.org/uniprot/O50301 O50301]
 +
** [http://www.uniprot.org/uniprot/O50302 O50302]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: synonymous=crtz}}
+
{{#set: common-name=carbamoyl phosphate synthetase}}
 +
{{#set: ec-number=ec-6.3.5.5}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=unknown-tool}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction comment=transformation of beta carotene into zeaxanthin (with beta cryptoxanthin as an intermediate)}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=sjap}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 09:31, 27 August 2019

Reaction CARBPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • carbamoyl phosphate synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline): PWY-5154
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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