Difference between revisions of "RXN-10059"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == * direction: ** left-to-right * common-name: ** carbamoyl phosphate s...")
(Created page with "Category:reaction == Reaction PROTOHEMEFERROCHELAT-RXN == * direction: ** reversible * common-name: ** ferrochelatase * ec-number: ** [http://enzyme.expasy.org/EC/4.99.1.1...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] ==
+
== Reaction PROTOHEMEFERROCHELAT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** carbamoyl phosphate synthetase
+
** ferrochelatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5]
+
** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[FE+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17851]]
+
* Gene: [[SJ19310]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15949]]
+
* Gene: [[SJ19170]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
+
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
 
 
** '''5''' reactions found over '''4''' reactions in the full pathway
 
** '''5''' reactions found over '''4''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
+
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P08955 P08955]
+
** [http://www.uniprot.org/uniprot/P22830 P22830]
−
** [http://www.uniprot.org/uniprot/P13258 P13258]
+
** [http://www.uniprot.org/uniprot/P22315 P22315]
−
** [http://www.uniprot.org/uniprot/P38099 P38099]
+
** [http://www.uniprot.org/uniprot/P28602 P28602]
−
** [http://www.uniprot.org/uniprot/P27708 P27708]
+
** [http://www.uniprot.org/uniprot/Q05338 Q05338]
−
** [http://www.uniprot.org/uniprot/Q91437 Q91437]
+
** [http://www.uniprot.org/uniprot/P42043 P42043]
−
** [http://www.uniprot.org/uniprot/O28994 O28994]
+
** [http://www.uniprot.org/uniprot/P23871 P23871]
−
** [http://www.uniprot.org/uniprot/P57689 P57689]
+
** [http://www.uniprot.org/uniprot/P32396 P32396]
−
** [http://www.uniprot.org/uniprot/P38098 P38098]
+
** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
−
** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
+
** [http://www.uniprot.org/uniprot/P56107 P56107]
−
** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
+
** [http://www.uniprot.org/uniprot/O67083 O67083]
−
** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
+
** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
−
** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
+
** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
−
** [http://www.uniprot.org/uniprot/P25993 P25993]
+
** [http://www.uniprot.org/uniprot/P22600 P22600]
−
** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
+
** [http://www.uniprot.org/uniprot/P43868 P43868]
−
** [http://www.uniprot.org/uniprot/P25994 P25994]
+
** [http://www.uniprot.org/uniprot/P16622 P16622]
−
** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
+
** [http://www.uniprot.org/uniprot/Q59735 Q59735]
−
** [http://www.uniprot.org/uniprot/O25577 O25577]
+
** [http://www.uniprot.org/uniprot/P43413 P43413]
−
** [http://www.uniprot.org/uniprot/P52557 P52557]
+
** [http://www.uniprot.org/uniprot/P54225 P54225]
−
** [http://www.uniprot.org/uniprot/P46537 P46537]
+
** [http://www.uniprot.org/uniprot/P42045 P42045]
−
** [http://www.uniprot.org/uniprot/P18185 P18185]
+
** [http://www.uniprot.org/uniprot/O64391 O64391]
−
** [http://www.uniprot.org/uniprot/P07259 P07259]
+
** [http://www.uniprot.org/uniprot/P42044 P42044]
−
** [http://www.uniprot.org/uniprot/P20054 P20054]
 
−
** [http://www.uniprot.org/uniprot/P05990 P05990]
 
−
** [http://www.uniprot.org/uniprot/P14845 P14845]
 
−
** [http://www.uniprot.org/uniprot/Q06950 Q06950]
 
−
** [http://www.uniprot.org/uniprot/Q92115 Q92115]
 
−
** [http://www.uniprot.org/uniprot/Q09794 Q09794]
 
−
** [http://www.uniprot.org/uniprot/P03965 P03965]
 
−
** [http://www.uniprot.org/uniprot/P07258 P07258]
 
−
** [http://www.uniprot.org/uniprot/P00968 P00968]
 
−
** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
 
−
** [http://www.uniprot.org/uniprot/P93345 P93345]
 
−
** [http://www.uniprot.org/uniprot/Q27732 Q27732]
 
−
** [http://www.uniprot.org/uniprot/Q27448 Q27448]
 
−
** [http://www.uniprot.org/uniprot/O50236 O50236]
 
−
** [http://www.uniprot.org/uniprot/O94313 O94313]
 
−
** [http://www.uniprot.org/uniprot/Q59968 Q59968]
 
−
** [http://www.uniprot.org/uniprot/Q59969 Q59969]
 
−
** [http://www.uniprot.org/uniprot/O50301 O50301]
 
−
** [http://www.uniprot.org/uniprot/O50302 O50302]
 
 
</div>
 
</div>
−
{{#set: direction=left-to-right}}
+
{{#set: direction=reversible}}
−
{{#set: common-name=carbamoyl phosphate synthetase}}
+
{{#set: common-name=ferrochelatase}}
−
{{#set: ec-number=ec-6.3.5.5}}
+
{{#set: ec-number=ec-4.99.1.1}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:40, 18 December 2020

Reaction PROTOHEMEFERROCHELAT-RXN

  • direction:
    • reversible
  • common-name:
    • ferrochelatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over 4 reactions in the full pathway
  • HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
    • 3 reactions found over 4 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-10059&oldid=49581"