Difference between revisions of "RXN-10062"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARSYN-RXN AICARSYN-RXN] == * direction: ** reversible * common-name: ** 5'-phosphoribosyl-4-(n-s...")
(Created page with "Category:reaction == Reaction PHOSPHORIBULOKINASE-RXN == * direction: ** reversible * common-name: ** phosphoribulokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AICARSYN-RXN AICARSYN-RXN] ==
+
== Reaction PHOSPHORIBULOKINASE-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** 5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase
+
** phosphoribulokinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
+
** [http://enzyme.expasy.org/EC/2.7.1.19 ec-2.7.1.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''<=>''' 1 [[AICAR]][c] '''+''' 1 [[FUM]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[RIBULOSE-5P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[D-RIBULOSE-15-P2]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06544]]
+
* Gene: [[SJ04903]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
+
* [[PWY-5723]], Rubisco shunt:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23923 23923]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19368 19368]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04559 R04559]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01523 R01523]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21265 P21265]
+
** [http://www.uniprot.org/uniprot/P23010 P23010]
−
** [http://www.uniprot.org/uniprot/Q58339 Q58339]
+
** [http://www.uniprot.org/uniprot/P0AEX5 P0AEX5]
−
** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
+
** [http://www.uniprot.org/uniprot/P19923 P19923]
−
** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
+
** [http://www.uniprot.org/uniprot/P19924 P19924]
−
** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
+
** [http://www.uniprot.org/uniprot/P23015 P23015]
−
** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
+
** [http://www.uniprot.org/uniprot/P12033 P12033]
−
** [http://www.uniprot.org/uniprot/O65180 O65180]
+
** [http://www.uniprot.org/uniprot/Q8GRU9 Q8GRU9]
−
** [http://www.uniprot.org/uniprot/P12047 P12047]
+
** [http://www.uniprot.org/uniprot/P09559 P09559]
 +
** [http://www.uniprot.org/uniprot/P25697 P25697]
 +
** [http://www.uniprot.org/uniprot/P93681 P93681]
 +
** [http://www.uniprot.org/uniprot/P19824 P19824]
 +
** [http://www.uniprot.org/uniprot/P27774 P27774]
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=5'-phosphoribosyl-4-(n-succinocarboxamide)-5-aminoimidazole lyase}}
+
{{#set: common-name=phosphoribulokinase}}
−
{{#set: ec-number=ec-4.3.2.2}}
+
{{#set: ec-number=ec-2.7.1.19}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:43, 18 December 2020

Reaction PHOSPHORIBULOKINASE-RXN

  • direction:
    • reversible
  • common-name:
    • phosphoribulokinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-5723, Rubisco shunt:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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