Difference between revisions of "RXN-10068"

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(Created page with "Category:reaction == Reaction TRIMETHYLLYSINE-DIOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** trimethyllysine dioxygenase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction RXN-10068 == * direction: ** reversible * common-name: ** isopentenyl phosphate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.26...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TRIMETHYLLYSINE-DIOXYGENASE-RXN ==
+
== Reaction RXN-10068 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** trimethyllysine dioxygenase
+
** isopentenyl phosphate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.8 ec-1.14.11.8]
+
** [http://enzyme.expasy.org/EC/2.7.4.26 ec-2.7.4.26]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[3-HYDROXY-N6N6N6-TRIMETHYL-L-LYSINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-10818]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ06433]]
−
* Gene: [[SJ15054]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07386]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12451]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04638]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ09343]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04640]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ04639]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ18761]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ01929]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6100]], L-carnitine biosynthesis:
+
* [[PWY-7524]], mevalonate pathway III (Thermoplasma):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6174]], mevalonate pathway II (haloarchaea):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR113468
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R10093 R10093]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14182 14182]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33963 33963]
−
* LIGAND-RXN:
+
{{#set: direction=reversible}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R03451 R03451]
+
{{#set: common-name=isopentenyl phosphate kinase}}
−
{{#set: direction=left-to-right}}
+
{{#set: ec-number=ec-2.7.4.26}}
−
{{#set: common-name=trimethyllysine dioxygenase}}
+
{{#set: nb gene associated=1}}
−
{{#set: ec-number=ec-1.14.11.8}}
+
{{#set: nb pathway associated=2}}
−
{{#set: nb gene associated=9}}
 
−
{{#set: nb pathway associated=1}}
 
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-10068

  • direction:
    • reversible
  • common-name:
    • isopentenyl phosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7524, mevalonate pathway III (Thermoplasma):
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (haloarchaea):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR113468
  • LIGAND-RXN:
  • RHEA:





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