Difference between revisions of "RXN-10068"

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(Created page with "Category:reaction == Reaction GLYCINE-N-METHYLTRANSFERASE-RXN == * direction: ** left-to-right * common-name: ** dimethylglycine n-methyltransferase * ec-number: ** [http:...")
(Created page with "Category:reaction == Reaction RXN-10068 == * direction: ** reversible * common-name: ** isopentenyl phosphate kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.26...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLYCINE-N-METHYLTRANSFERASE-RXN ==
+
== Reaction RXN-10068 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** dimethylglycine n-methyltransferase
+
** isopentenyl phosphate kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.1.1.20 ec-2.1.1.20]
+
** [http://enzyme.expasy.org/EC/2.7.4.26 ec-2.7.4.26]
−
* synonymous:
 
−
** gsmt
 
−
** gmt
 
−
** s-adenosyl-l-methionine:sarcosine n-methyltransferase
 
−
** gsdmt
 
−
** glycine sarcosine n-methyltransferase
 
−
** apgsmt
 
−
** glycine sarcosine dimethylglycine n-methyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLY]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SARCOSINE]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CPD-10818]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DELTA3-ISOPENTENYL-PP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ06433]]
−
* Gene: [[SJ12116]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12128]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12118]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12119]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18177]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03081]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02539]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10116]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02540]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14716]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11087]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P541-PWY]], glycine betaine biosynthesis IV (from glycine):
+
* [[PWY-7524]], mevalonate pathway III (Thermoplasma):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6004]], glycine betaine biosynthesis V (from glycine):
+
* [[PWY-6174]], mevalonate pathway II (haloarchaea):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR100391
+
* METANETX-RXN : MNXR113468
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R10093 R10093]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19938 19938]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33963 33963]
−
* LIGAND-RXN:
+
{{#set: direction=reversible}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00367 R00367]
+
{{#set: common-name=isopentenyl phosphate kinase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-2.7.4.26}}
−
** [http://www.uniprot.org/uniprot/P13255 P13255]
+
{{#set: nb gene associated=1}}
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=dimethylglycine n-methyltransferase}}
 
−
{{#set: ec-number=ec-2.1.1.20}}
 
−
{{#set: synonymous=apgsmt|gmt|gsmt|gsdmt|glycine sarcosine n-methyltransferase|glycine sarcosine dimethylglycine n-methyltransferase|s-adenosyl-l-methionine:sarcosine n-methyltransferase}}
 
−
{{#set: nb gene associated=11}}
 
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Latest revision as of 11:22, 18 March 2021

Reaction RXN-10068

  • direction:
    • reversible
  • common-name:
    • isopentenyl phosphate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7524, mevalonate pathway III (Thermoplasma):
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (haloarchaea):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR113468
  • LIGAND-RXN:
  • RHEA:





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