Difference between revisions of "RXN-10616"
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(Created page with "Category:reaction == Reaction RXN-10706 == * direction: ** left-to-right * common-name: ** acyl-coa oxidase ** fatty-acyl coenzyme a oxidase * ec-number: ** [http://enzyme...") |
(Created page with "Category:reaction == Reaction RXN-8665 == * direction: ** left-to-right * common-name: ** tryptophan 2,3-dioxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11.1...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN- | + | == Reaction RXN-8665 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** tryptophan 2,3-dioxygenase |
| − | |||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.13.11.11 ec-1.13.11.11] |
| + | ** [http://enzyme.expasy.org/EC/1.13.11.52 ec-1.13.11.52] | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[N-FORMYLKYNURENINE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ12575]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
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| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
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| − | |||
| − | |||
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** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY-5651]], L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde: |
| − | ** ''' | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
| + | * [[PWY-6309]], L-tryptophan degradation XI (mammalian, via kynurenine): | ||
| + | ** '''7''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[PWY-7765]], 3-hydroxy-4-methyl-anthranilate biosynthesis II: | ||
| + | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY-7717]], 3-hydroxy-4-methyl-anthranilate biosynthesis I: | ||
| + | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[TRPCAT-PWY]], L-tryptophan degradation I (via anthranilate): | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R00678 R00678] | ||
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/P21643 P21643] | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24536 24536] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=tryptophan 2,3-dioxygenase}} |
| − | {{#set: ec-number=ec-1. | + | {{#set: ec-number=ec-1.13.11.52|ec-1.13.11.11}} |
| − | {{#set: nb gene associated= | + | {{#set: nb gene associated=1}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | ||
Revision as of 11:20, 15 January 2021
Contents
Reaction RXN-8665
- direction:
- left-to-right
- common-name:
- tryptophan 2,3-dioxygenase
- ec-number:
Reaction formula
- 1 OXYGEN-MOLECULE[c] + 1 TRP[c] => 1 N-FORMYLKYNURENINE[c]
Gene(s) associated with this reaction
- Gene: SJ12575
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5651, L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde:
- 3 reactions found over 5 reactions in the full pathway
- PWY-6309, L-tryptophan degradation XI (mammalian, via kynurenine):
- 7 reactions found over 11 reactions in the full pathway
- PWY-7765, 3-hydroxy-4-methyl-anthranilate biosynthesis II:
- 3 reactions found over 5 reactions in the full pathway
- PWY-7717, 3-hydroxy-4-methyl-anthranilate biosynthesis I:
- 3 reactions found over 6 reactions in the full pathway
- TRPCAT-PWY, L-tryptophan degradation I (via anthranilate):
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
