Difference between revisions of "RXN-10616"

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(Created page with "Category:reaction == Reaction RXN-8665 == * direction: ** left-to-right * common-name: ** tryptophan 2,3-dioxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.13.11.1...")
(Created page with "Category:reaction == Reaction RXNARA-8002 == * direction: ** left-to-right * common-name: ** phytoene synthase * synonymous: ** geranylgeranyl-diphosphate geranylgeranyltr...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8665 ==
+
== Reaction RXNARA-8002 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** tryptophan 2,3-dioxygenase
+
** phytoene synthase
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/1.13.11.11 ec-1.13.11.11]
+
** geranylgeranyl-diphosphate geranylgeranyltransferase
−
** [http://enzyme.expasy.org/EC/1.13.11.52 ec-1.13.11.52]
+
** prephytoene-diphosphate synthase
 +
** psase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[N-FORMYLKYNURENINE]][c]
+
* 1 [[CPD-464]][c] '''=>''' 1 [[CPD-12321]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12575]]
+
* Gene: [[SJ02885]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 17: Line 18:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5651]], L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde:
+
* [[PWY-5942]], trans-lycopene biosynthesis I:
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6309]], L-tryptophan degradation XI (mammalian, via kynurenine):
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
−
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7765]], 3-hydroxy-4-methyl-anthranilate biosynthesis II:
+
* [[PWY-6287]], neurosporene biosynthesis:
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7717]], 3-hydroxy-4-methyl-anthranilate biosynthesis I:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[TRPCAT-PWY]], L-tryptophan degradation I (via anthranilate):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR108741
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=34480 34480]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00678 R00678]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07270 R07270]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P21643 P21643]
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24536 24536]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=tryptophan 2,3-dioxygenase}}
+
{{#set: common-name=phytoene synthase}}
−
{{#set: ec-number=ec-1.13.11.52|ec-1.13.11.11}}
+
{{#set: synonymous=psase|prephytoene-diphosphate synthase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction RXNARA-8002

  • direction:
    • left-to-right
  • common-name:
    • phytoene synthase
  • synonymous:
    • geranylgeranyl-diphosphate geranylgeranyltransferase
    • prephytoene-diphosphate synthase
    • psase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5942, trans-lycopene biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR108741
  • RHEA:
  • LIGAND-RXN:





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