Difference between revisions of "RXN-10657"
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(Created page with "Category:reaction == Reaction RXN-12244 == * direction: ** left-to-right * common-name: ** 15-cis-phytoene desaturase ** 15,9'-di-cis phytofluene desaturase * synonymous:...") |
(Created page with "Category:reaction == Reaction GLUTKIN-RXN == * direction: ** left-to-right * common-name: ** glutamate 5-kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.11 ec-2....") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction GLUTKIN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** glutamate 5-kinase |
− | * | + | * ec-number: |
− | + | ** [http://enzyme.expasy.org/EC/2.7.2.11 ec-2.7.2.11] | |
− | ** | ||
− | |||
− | |||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[L-GLUTAMATE-5-P]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ02923]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06433]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ22406]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ09366]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[PWY-6922]], L-Nδ-acetylornithine biosynthesis: |
− | ** ''' | + | ** '''5''' reactions found over '''7''' reactions in the full pathway |
+ | * [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-3341]], L-proline biosynthesis III (from L-ornithine): | ||
+ | ** '''4''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PROSYN-PWY]], L-proline biosynthesis I (from L-glutamate): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14878 14878] |
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00239 R00239] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PJ29 Q9PJ29] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CF72 Q9CF72] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JUK7 Q9JUK7] | ||
+ | ** [http://www.uniprot.org/uniprot/P43763 P43763] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A7B5 P0A7B5] | ||
+ | ** [http://www.uniprot.org/uniprot/P17856 P17856] | ||
+ | ** [http://www.uniprot.org/uniprot/P32264 P32264] | ||
+ | ** [http://www.uniprot.org/uniprot/P73071 P73071] | ||
+ | ** [http://www.uniprot.org/uniprot/O04226 O04226] | ||
+ | ** [http://www.uniprot.org/uniprot/O13810 O13810] | ||
+ | ** [http://www.uniprot.org/uniprot/P46546 P46546] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=glutamate 5-kinase}} |
− | {{#set: | + | {{#set: ec-number=ec-2.7.2.11}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=4}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 15:35, 5 January 2021
Contents
Reaction GLUTKIN-RXN
- direction:
- left-to-right
- common-name:
- glutamate 5-kinase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 GLT[c] => 1 ADP[c] + 1 L-GLUTAMATE-5-P[c]
Gene(s) associated with this reaction
- Gene: SJ02923
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06433
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ22406
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ09366
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- PWY-6922, L-Nδ-acetylornithine biosynthesis:
- 5 reactions found over 7 reactions in the full pathway
- ARGININE-SYN4-PWY, L-ornithine biosynthesis II:
- 3 reactions found over 4 reactions in the full pathway
- PWY-3341, L-proline biosynthesis III (from L-ornithine):
- 4 reactions found over 3 reactions in the full pathway
- PROSYN-PWY, L-proline biosynthesis I (from L-glutamate):
- 3 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY, L-citrulline biosynthesis:
- 7 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: