Difference between revisions of "RXN-10664"

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(Created page with "Category:reaction == Reaction 3.2.2.23-RXN == * direction: ** left-to-right * common-name: ** oxidized purine nucleobase lesion dna n-glycosylase ** formamidopyrimidine dn...")
(Created page with "Category:reaction == Reaction PANTOATE-BETA-ALANINE-LIG-RXN == * direction: ** left-to-right * common-name: ** pantothenate synthetase * ec-number: ** [http://enzyme.expas...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.2.2.23-RXN ==
+
== Reaction PANTOATE-BETA-ALANINE-LIG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** oxidized purine nucleobase lesion dna n-glycosylase
+
** pantothenate synthetase
−
** formamidopyrimidine dna glycosylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.2.23 ec-3.2.2.23]
+
** [http://enzyme.expasy.org/EC/6.3.2.1 ec-6.3.2.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DNA-containing-diamino-hydro-formamidops]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-16491]][c] '''+''' 1 [[DNA-containing-aPurinic-Sites]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[B-ALANINE]][c] '''+''' 1 [[L-PANTOATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PANTOTHENATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18415]]
+
* Gene: [[SJ13797]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12532]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12275]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PANTO-PWY]], phosphopantothenate biosynthesis I:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10913 10913]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02473 R02473]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44948 P44948]
+
** [http://www.uniprot.org/uniprot/P31663 P31663]
−
** [http://www.uniprot.org/uniprot/P57014 P57014]
+
** [http://www.uniprot.org/uniprot/Q9PIK2 Q9PIK2]
−
** [http://www.uniprot.org/uniprot/P05523 P05523]
+
** [http://www.uniprot.org/uniprot/P56061 P56061]
−
** [http://www.uniprot.org/uniprot/P19210 P19210]
+
** [http://www.uniprot.org/uniprot/P57035 P57035]
−
** [http://www.uniprot.org/uniprot/P74290 P74290]
+
** [http://www.uniprot.org/uniprot/Q9ZN52 Q9ZN52]
−
** [http://www.uniprot.org/uniprot/O69470 O69470]
+
** [http://www.uniprot.org/uniprot/Q09673 Q09673]
 +
** [http://www.uniprot.org/uniprot/O24210 O24210]
 +
** [http://www.uniprot.org/uniprot/Q9X713 Q9X713]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=formamidopyrimidine dna glycosylase|oxidized purine nucleobase lesion dna n-glycosylase}}
+
{{#set: common-name=pantothenate synthetase}}
−
{{#set: ec-number=ec-3.2.2.23}}
+
{{#set: ec-number=ec-6.3.2.1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:21, 15 January 2021

Reaction PANTOATE-BETA-ALANINE-LIG-RXN

  • direction:
    • left-to-right
  • common-name:
    • pantothenate synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PANTO-PWY, phosphopantothenate biosynthesis I:
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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